KEGG   Vitis vinifera (wine grape): 100255608
Entry
100255608         CDS       T01084                                 
Name
(RefSeq) DNA mismatch repair protein MSH6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100255608
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100255608
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100255608
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_IV MutS_II PTM_DIR17_Tudor Tudor_KDM3B DUF4666 PSME4_C
Other DBs
NCBI-GeneID: 100255608
NCBI-ProteinID: XP_002275930
UniProt: F6HZ94 A0ABY9C6F4
LinkDB
Position
7:complement(join(4263868..4264130,4264328..4264457,4264749..4264848,4264973..4265052,4265380..4265517,4265594..4265883,4266316..4266478,4266615..4266716,4266826..4267028,4267101..4267279,4267389..4267480,4268344..4268473,4268552..4269099,4269503..4269682,4270070..4270153,4270280..4270348,4270489..4270563,4270651..4270704,4270798..4270900,4271281..4271377,4271917..4272730))
AA seq 1297 aa
MAPTRRMSNGRSPLVNQQSQITAFFSKTSSSPSPSPVLSKQDLNPKPSPSPSPSPSPTTP
SPVQAKLRKPLLVIGPSKTTSPSTPVTGSKSYGEEVVNRRVKVYWPLDKSWYVGCVKSFD
ELTGEHLVQYDDADEETLDLGKEKIEWVEDKGRSLRRLRRGSVFEKGVVPVGEANVEEES
GGDDSSDEDWGKGKGREEVEDDSEDVEFEEEEDEEEEVEGPKKGQSKKVDPKKRKAVGEG
TMGSGKRRKSSGGAEKNTFKVSSVEPMKNAESRKASDILDNVLPGDALERFGAREAEKLP
FLGGERKDAKRRCPGDANYDPRTLYLPPNFLKNLTGGQRQWWEFKSRHMDKVIFFKMGKF
YELFEMDAHIGAKELDLQYMKGGQPHCGFPEKNFSINVEKLARKGYRVLVVEQTETPEQL
ELRRKEKGSKDKVVKREICAVVTKGTLTEGEMLSANPDASYLMAVTESCQFEERSFGVCV
VDVATSRIILGQFRDDSECSTLCCLLSELRPVEIIKPANLLSPETERALMRHTRSPLVNE
LVPISEFWDSKKTVSEIRSVYRCFNDLSVSGSLNEANLSVKGSFVEEDPLGLPDILSKLV
NAGESGSLALSALGGTLFYLKQAFMDETLLRFAKFELFPYSGVSDIFHKPYMVLDAAALE
NLEIFENSRKGDSSGTLYAQLNHCVTAFGKRLLKTWLARPLYHLDSIRERQDAVAGLRGV
NLPSALEFRKELSRLPDMERLLARIFASSEANGRNANKVVFYEDAAKKQLQEFISALRGC
ELMTQACSSLGVILENVESGLLHHLLTPGKGLPDIHSVINHFKEAFDWVEANNSGRIIPH
EGVDKEYDSACKTVKEIELRLKKHLKEQQKLLGDASINFVTIGKEAYLLEVPESLRGNIP
RDYELRSSKKGFFRYWTPNIKKFLGELSHAESEKESKLRSILQRLISRFCEHHDKWRQLV
SSTAELDVLISLAIANDYYEGPTCRPVISGLSNSNEVPCFTAKSLGHPVLRSDSLGKGTF
VPNDITIGGSDHACFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAESFELSPVDRIF
VRMGAKDNIMAGQSTFLTELSETASMLTSATCNSLVALDELGRGTSTSDGQAIAESVLEH
FVHKVRCRGMFSTHYHRLAVDYKKNSKVSLCHMACQVGKGVGGVEEVTFLYRLRPGACPK
SYGVNVARLAGLPNSVLQKAAAKSREIEGIYGRHRKGSDDGCDERLSSQNSEDDVVFFIQ
SLINGVAKLSYHKSFKDIHASSLSDLQQRARIFLDQN
NT seq 3894 nt   +upstreamnt  +downstreamnt
atggctccaacacgtcgtatgagcaatggaagatcgccactggtgaaccagcaaagccaa
attacagcgttcttctccaaaacttcatcttctccttctccttcgcctgttctctccaaa
caggaccttaaccctaaacctagccctagccctagccccagccctagtccgacgactcct
tcacctgtgcaagccaagcttagaaagccgctcttagtgatcggcccatctaagaccact
tctccttcaacgccggttacgggaagcaaatcgtacggagaggaggttgtgaacaggaga
gtcaaggtttactggccgttggataagagctggtacgtgggttgcgtgaaatcgttcgat
gagctaaccggcgagcatttggttcagtacgatgatgccgatgaggagactcttgatctt
ggtaaggagaagatcgagtgggtggaggataaaggcagaagccttcgtcgattgcgtcgg
ggttcggtttttgagaagggggtggttcccgtcggggaagccaatgtggaggaggagagt
ggtggtgatgattcgagtgatgaagattggggaaagggtaagggaagggaggaggttgaa
gatgattcggaagatgttgaatttgaggaagaggaggatgaagaagaggaagttgagggc
cccaaaaaagggcaaagtaagaaggttgatccgaagaagcggaaggcggttggagaagga
acaatgggttctggtaagaggagaaagagcagtggaggagcggagaagaatacatttaaa
gtttcctcagtagagcctatgaagaatgctgagagcaggaaggcttcagacatccttgac
aatgtcctaccaggcgatgccttagaaagatttggtgcacgtgaagcagagaagttgccc
ttccttgggggagaacgcaaggatgctaaaagaagatgtcctggagatgcaaattatgat
ccaagaactctttacttgcctcctaattttttaaagaatttaacaggtggccagagacaa
tggtgggagtttaagtcaaggcatatggacaaggttatttttttcaagatgggcaagttt
tatgaactttttgaaatggatgcgcatataggagcaaaagagcttgatttgcaatatatg
aaggggggacaacctcattgtggatttccagaaaaaaacttctcaataaatgttgagaaa
ttggctagaaagggttatcgtgttcttgttgtagagcaaacagaaacacctgagcagctt
gagcttcgtcgcaaagagaagggttctaaggacaaggttgtgaaacgtgaaatatgtgca
gtggtcacaaagggaacactaactgaaggcgagatgctatcagccaaccctgatgcttct
taccttatggcagtaactgaaagctgtcagtttgaagaacgcagttttggtgtttgtgta
gttgatgttgctacaagcaggattattcttggacagttcagggatgattcagagtgcagc
accctgtgttgtctattatctgagctaaggcctgtagagattataaaaccagctaacctt
ctcagtcctgaaactgagagagcactgatgagacatacaagaagccctttagtaaatgaa
ctggttccaatctcagaattctgggactctaagaaaactgtttctgaaatcaggagtgtc
tacagatgtttcaatgatctatcagtttctggatctttaaatgaagcaaatttgagtgtt
aagggttcttttgttgaagaagatcccttgggcctacctgacattttgtccaagttggtg
aatgcaggcgagagtggcagccttgcactttcagcccttgggggcactcttttctatcta
aagcaggcttttatggatgaaacattgcttagatttgctaagtttgagttatttccatac
tctggtgttagtgatatctttcataagccatacatggttcttgatgctgctgccctggag
aaccttgagatttttgagaacagtagaaaaggagactcatcagggactctctatgcacaa
ctaaatcactgtgtgactgcatttggtaagaggttgctgaagacatggcttgcaagacct
ttataccatttggattcaattagggaacgccaggatgctgtggcaggtctgaggggagtt
aatctaccttctgcacttgaatttcgaaaagagttgtctaggcttccagacatggagcgg
ttgcttgcacgtatctttgctagcagtgaagctaatggaaggaatgcaaacaaggtagtt
ttctatgaggatgcggcaaagaaacagctccaggagtttatatcagctctacgtggatgt
gaattaatgacacaagcatgctcttctcttggtgtcattttggaaaatgttgaatctgga
ctactacatcatttattaacacctggtaaaggtcttcctgacattcattcagttataaac
catttcaaggaagcttttgattgggtggaagccaataattctggacgtataatacctcat
gaaggagttgataaggagtatgactctgcctgtaaaacagtcaaggagattgaattaagg
ttgaaaaagcacttaaaggagcagcagaaattacttggagatgcatcaataaattttgta
acaattggaaaagaagcataccttttagaagtgccagaaagtttgcgggggaatattcct
cgggattatgaattacgatcatccaaaaagggattcttccggtactggactccaaacatt
aagaagttcttaggagagctctcacatgctgaatcagaaaaggagtctaagttgagaagc
attttacaaaggttgatcagtcgtttctgtgaacatcatgataagtggagacagttggtt
tcttcaactgcagaactggatgtattgatcagtttagcaatcgcaaatgactactatgaa
ggaccaacatgccggccagtgatctcagggttatccaattcaaatgaagtgccatgcttt
actgcaaaaagtttaggacatcctgttcttaggagtgattctttagggaagggtacattt
gtccccaatgacattactattggtggttctgatcatgcctgctttatccttctcactggt
ccaaacatgggtggaaaatcaactcttcttcgccaagtttgcttggctgttattttggcc
caggtgggagctgatgtgcctgcagaaagctttgagctttcacctgtggaccgcatcttt
gttaggatgggtgcaaaagataatattatggctggccaaagtacatttttaacagagctt
tctgaaactgcatctatgctgacatcagcaacctgcaattcactggtggcactggatgaa
cttggacgtgggacatcaacgtcagatggacaagcaattgcggaatcagttcttgaacat
tttgttcataaggtgcggtgtcgaggaatgttttctactcactatcaccgattagcagta
gactacaaaaaaaattccaaggtctccctatgccatatggcatgtcaagtcggaaaggga
gttggaggcgtggaggaagtaacttttctttacaggttgaggcctggtgcatgccctaaa
agctatggcgtcaatgttgcacggctagctggacttcctaactctgtacttcaaaaggct
gctgctaagtcaagagagattgagggcatatatggtaggcacaggaagggatctgatgat
ggatgtgatgaaagattatcatcccaaaattcagaagatgatgtggtattcttcatccaa
agcttgattaacggtgtagcaaaattgagttaccacaagtctttcaaggacatacatgct
tcttcgctgagtgaccttcagcagagagcaagaatatttcttgatcagaattaa

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