Vitis vinifera (wine grape): 100255780
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Entry
100255780 CDS
T01084
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X2
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100255780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100255780
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
100255780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
100255780
NCBI-ProteinID:
XP_002273329
LinkDB
All DBs
Position
15:join(18092343..18092357,18093463..18093555,18093962..18094013,18094391..18094522,18095900..18096309,18098542..18098825,18099674..18099869,18099985..18100191,18101185..18101352,18101438..18101755,18101960..18102090,18102204..18102264)
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AA seq
688 aa
AA seq
DB search
MIRNQEALVLLLDVSPPMHNFLPEVEKLCFMLLQKKLIYNKKDLVGIVLFGTKVTKNELT
KKVGGYKYVLVSQDIKVVDGDLVEAVRELPRGTFAGDFLDAIVVGMDMLIKKFLLTKRGK
IKKRLCLITSALCPTKGPYKGAKEDEIGTIAEQMTAHGIRLECIVARGRLSGNMNMRIME
ENDLLLKLFSKKTIAKTVYVESPTSLLGALRTRNVAPVTIFRGDLELSPKMEIKVWVYKK
SAEELPVLKLYSDEAPPTDKFATHEVRVNLQYKSVEDPTKVVPLTQRIQGYSYGPQVVPI
SSAEWEAVKFEPEKGVKLLGFTDASNIMRHYYKKDVNIFIAEPGNTKAILAVSALARAMK
EMNKVAILRCVWRRKQRNVIIGILTPNVSEKDSVPDSFYFNVLPYAEDVQEFQFPSFSNL
PLSWQPNEEQQEAADDLVQMLYLAPFGREESLLPDVTPNPVLERFYRYLELKSKKPYAAV
PPVDKTLKTITEPDPKLLAQNKSIIDEFKRRFELKQNPKLKKSTRDRQSGVKEEANIGES
SDAGAINSVENTSVITMVKKIGDSTPIQDFEAMMSHRESPEWVGKAIKEMKNKIFDLVQN
SNERDNHLKALDCLVAFRKGCILEQKPTEFNNFLLHIYKFCKYHNLNSFCESLASNEIML
IPKTEVTDSEVTEDGARNFMVKKEPILE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgattcgaaatcaggaggcattggttttattgcttgatgtcagtccaccaatgcacaat
tttctgccagaagttgaaaaactctgcttcatgctattgcagaagaagctgatctacaac
aaaaaagatttagttggaattgttttatttggaactaaagttactaaaaatgagctgacg
aagaaagtggggggatataagtatgtgctggtttcacaggatatcaaagttgttgatggt
gatctggttgaagctgtacgagaacttcctcgagggacttttgctggtgattttctcgat
gctattgttgttgggatggatatgttgataaagaaatttctattgacaaaaaggggaaag
ataaagaaacgtctttgccttattacaagtgcactatgtcctaccaagggtccatataaa
ggagcaaaagaagatgaaattggcaccattgctgaacaaatgactgcacatggcatcagg
ctggaatgtatagttgcaagggggaggctaagtggcaatatgaatatgagaataatggag
gagaatgatcttctattgaaactattttccaagaagacaattgcaaagacagtgtatgtt
gagagtcctacttcattattaggtgcccttagaactcggaacgtagcacctgttacaata
ttcagaggtgatcttgaattaagccccaaaatggagatcaaggtatgggtttacaagaaa
tcagctgaagagctccctgtactgaaactatattcagatgaagctcctcctactgataaa
tttgccacacatgaagtcagggtaaatcttcagtataaaagtgttgaagatcctaccaaa
gttgtacctctgacgcaaaggattcaaggttatagttatggacctcaagttgttccaatt
tcatctgctgaatgggaagctgtcaaattcgaaccagaaaagggtgtgaagcttctagga
ttcactgatgcttcaaacataatgcgccactattacaagaaggatgtcaacatcttcatt
gctgagccaggaaatacaaaggctattcttgcagtttctgccttagcaagagcaatgaag
gaaatgaacaaggtagcaattttgcgctgtgtttggagacgaaaacagagaaatgttatc
atagggatcttgacacccaatgtatctgaaaaagatagtgttcctgattcgttttacttt
aatgtacttccctatgctgaggatgttcaagaatttcagtttccatctttcagcaatctt
cctttgtcatggcagccaaatgaagaacagcaagaagcagcagatgacttggtccagatg
ctttatcttgcaccatttggcagagaggaatctctcttacctgatgttacacccaatcct
gttctggagcgtttttatcgttatcttgagttgaagtcgaagaagccatatgcagctgtt
cctccagttgacaaaaccctcaaaacaataacggagcctgatccaaaactccttgctcaa
aacaagtccataattgatgaatttaaaaggcggtttgaactcaagcagaatcctaagctg
aagaaatcaactagagacagacagtctggtgtgaaagaggaagcaaatattggagagagt
agtgatgctggagccatcaattctgttgaaaatacatctgtaattactatggttaagaag
attggagattcaactcctatccaagattttgaagccatgatgtcacacagagaaagccca
gagtgggttggtaaagcaatcaaggagatgaagaacaagatttttgacctggtgcaaaat
tcaaatgaaagggataaccatcttaaagcattggattgtctagttgcctttcgcaagggt
tgcatccttgagcaaaaaccgacagagttcaacaatttcctcctccatatttacaaattc
tgcaagtaccataatctcaacagtttctgtgaatcccttgcatcaaatgaaatcatgctg
atccccaagactgaagtaacagacagtgaagttacagaagatggggccagaaactttatg
gtgaaaaaggagccaatactagagtaa
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