KEGG   Vitis vinifera (wine grape): 100255871
Entry
100255871         CDS       T01084                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
  KO
K13181  ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100255871
   03009 Ribosome biogenesis [BR:vvi03009]
    100255871
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100255871
Spliceosome [BR:vvi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    100255871
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100255871
SSDB
Motif
Pfam: DEAD Helicase_C ARTD15_N AAA_22
Other DBs
NCBI-GeneID: 100255871
NCBI-ProteinID: XP_002273443
UniProt: A0ABY9DT59 F6H1L9
LinkDB
Position
18:join(12480306..12480581,12480659..12480838,12480912..12480980,12481135..12481241,12488634..12488712,12489386..12489559,12491850..12491998,12492211..12492306,12492937..12493039,12493184..12493246,12493694..12493755,12494011..12494107,12496106..12496224,12496307..12496349,12496602..12496703,12498660..12498758,12498859..12498945,12499563..12499840,12500664..12500679)
AA seq 732 aa
MDSSFVFEVPSDEEPEYEPDEDEEEEEGEGEGAAQTASQSPWDFASYSETVAEEHARRST
TSVDFKISKALEQRRLPIPNQDDSSESESDHQEDYTPEDADEAASVGGDRKSFFAPADGA
SFHANSFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFS
LPTLERLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQE
TALRSMPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCP
KRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAV
LLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQ
VDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRS
LLKSIVKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKA
ENMIAHKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAEDLKMKEK
RKREREKNLPRKKRRKLEAARERLEDENQIHKLKEGGRENKKEKAGISLVGIGYRRAKAV
KAVKKAQDAGKIGRKANKKSERPSQTNQSRTEEMQELFQSDMSERKQKRSIRGAGKKKSK
NSFKSKSRYKRK
NT seq 2199 nt   +upstreamnt  +downstreamnt
atggattcaagtttcgtattcgaagtccccagcgacgaagaacccgagtacgaacctgac
gaggatgaagaagaagaagaaggagaaggagaaggagcagcacagaccgcctctcaatct
ccatgggacttcgcttcatactccgagactgttgccgaagaacacgctcgtcgaagcaca
acctcagtcgatttcaagatctccaaagcgcttgagcaacgtcgtctcccaatccccaac
caagacgatagctccgaatccgaatctgaccaccaagaggattatacgcccgaagacgct
gacgaggcggccagtgtcggcggtgaccgcaagtccttctttgctcctgctgatggagct
tcttttcatgccaattcgttcttggagcttaacctctctcgaccgttgcttcgagcttgc
gaagctttgggatacactaaacccaccccaattcaggcagcctgcataccaatagcttta
actgggcgagatatttgtgggagcgccattactggctctggcaagacggctgccttttcc
ttacctacattagagaggttattgttccgtccaaaacgtgtgcaagcaatcagggtcctt
gttcttactccaaccagagagttggctgttcaggtccatagtatgatggaaaaactcgct
caatttactgatatccgatgttgcctgatagttggagggctttcatcaaagatgcaagag
acagctttgagatcaatgcctgatgttgttgtggctaccccgggacggatgatagatcat
ttacgcaattccatgtctgtggatttggaagatcttgcagttctaatccttgatgaggca
gatcgccttctggagcttggatttaatgctgaaattcgtgaactggttcgcttatgtcct
aaacggaggcagaccatgctattttcagctacgatgactgaagaagttgatgagctagtc
aagctttctatgaccaaaccaatgcgccttgctgctgatccatccacgaaacggccagca
acattgacagaagaggtggtacggatacggcgaatgagagaagtaaatcaggaggcagtt
cttcttgcgttgtgctccaagaccttcacagcaaaagcgattatcttcagtggaaccaaa
caagctgcacataggttgaagattttgtttggattggctggctttaaggctgctgagctt
catggaaatcttacacaagtccagcgtcttgatgctttggaacttttcaggaagcagcaa
gttgattttttgattgcaacagatgttgccgctcgtggacttgacataattggtgttcaa
acagttataaactatgcatgtcctcgtgatcttaccagttacgttcatcgtgttggtcgt
acagcaagggctggtagagaaggatatgctgttacatttgtaactgataatgatagatct
ctcttgaaatctatagtgaagagagctggttcaaagctgaggagccgaattgttgcagag
caatctataattaagtggtctcatatgattgaacaaatggaagatcaagttgctgccatt
ctccaggaagagagggaagagagaatcctcagaaaagctgaaatggaagcaacaaaggct
gaaaacatgattgcccataaggatgatatctactcacgccctaaaagaacctggtttgca
acagaaaaggagaagaagtctgtggcaaaggcagcaaaggattctctagaaaaggaaaat
ggttctgggaataatgtaatcagtgcccaacaagctgaagacctcaaaatgaaggaaaag
aggaaaagagaacgagagaaaaatttgccacggaagaagcggcgaaaactggaagcagct
agagagagattggaggatgaaaatcaaattcacaagttaaaagaagggggcagggaaaat
aagaaagaaaaggctggaatctcacttgtaggcataggttatagacgggcaaaagcagtg
aaggctgtaaagaaggcacaagatgctggcaagattgggaggaaggccaataaaaaatca
gaacggccttctcaaacaaatcaatcaaggacagaagagatgcaggagctgttccagagt
gacatgagtgagagaaagcagaaaagaagcattcgtggtgctggaaagaaaaagtccaag
aattcatttaaaagcaagtcacgatacaagcgcaagtaa

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