Vitis vinifera (wine grape): 100255963
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Entry
100255963 CDS
T01084
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vvi03009
]
100255963
Ribosome biogenesis [BR:
vvi03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
100255963
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Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
VPS8_N
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
100255963
NCBI-ProteinID:
XP_002279752
LinkDB
All DBs
Position
17:join(1696014..1696259,1697836..1697949,1698116..1698249,1698389..1698533,1698627..1698829,1698958..1699079,1699352..1699584,1699753..1700001)
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AA seq
481 aa
AA seq
DB search
MREKKMDWSGGREALVVCSDRSMSVGITVWDMVSGDQLLHIPTCAASPHGLLCLREQFLV
ASQIHRHGSLGGGAIFIWPLNKPQSPLRNYPMEAIGPVSCSKDGVYIVGGAPSGNAYIWE
VADGRLLKTWRAHHKSLTSMVFSDDDSLLISGSDDGMIRVWSMISLLDIADCGRFPSLFH
SLLEHTSSITGLLSISGSSSPVLVSSSLDGTCKVWDLIRGRLLRTRVFPTAITAIVLDPG
EQLLFSGSADGRIFVSMLDTGLVVDPFKVPEDRPIVLNGHNRSITALAFSRLGLVSASRD
CAAHLWDVASGVIIRRFNHPKGAITNMVVIPKSSLLSVTNHQRFSNQFRVSLLDKYPQPG
NSSMGMITLLPLCCSHRVHLPTIGFQSTVSLNQQILDLEQECTPGAIQMKLETSIENRMW
AARMTKHVMEMNKHLQSRLLDLMQNRLLLSADSTAARKRKRAMLESSRIQEEEQSQLPSY
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagagagaaaaagatggattggagtggaggaagagaggcattggtggtgtgcagtgat
aggagtatgagtgtgggaataacagtgtgggacatggtcagtggtgaccaacttctccac
attccaacctgtgcggcttctccccatgggctcttgtgtctgagagagcagttccttgtg
gcttctcagattcacaggcatgggtcacttggtggtggcgccatcttcatctggcccttg
aataagcctcaatcgccccttcgaaactatccaatggaggccatcggcccagtgtcatgc
tcaaaggatggtgtatatattgtgggtggtgctccttcgggaaatgcctatatttgggag
gttgctgatggaagactgctcaagacttggcgtgcccatcacaaatctttgactagcatg
gtgttttctgatgatgattctcttctaatttctggttctgacgatgggatgatccgggtt
tggtctatgattagtttgctagacatcgcagattgtggaaggtttccttctttgttccat
tctttgttggagcacacatcctctataactggtctgttatctatatcaggcagctcgagt
ccagttctcgtatcgagctcccttgatggcacgtgcaaggtttgggacctgatcaggggt
aggcttctacgaacccgagtttttccaacagcaataactgctattgttcttgatccaggg
gagcagctcttattctctggaagcgcagatgggagaatttttgttagcatgcttgacact
gggctggtggtggatccattcaaagttccagaggatcgaccgattgtgctaaatggacac
aacaggtccataactgcattggccttcagtagattgggtctggtgtcagcttctagggac
tgcgctgcccacctctgggatgttgccagtggggttatcatcagaagattcaatcatcca
aaaggggcaattactaatatggtagtgatcccaaagtcgtcactgctttctgtgacaaac
catcagcgattctctaatcagttccgtgtttctttgcttgacaagtatcctcagccaggc
aactcatccatgggaatgatcactctcctacctttatgttgttcccacagagttcacctc
cctactattggcttccaaagcacagtttcactaaaccagcagattctcgatctggagcaa
gaatgtacaccaggagcaatacaaatgaaactagagacaagtatagagaaccggatgtgg
gctgcaagaatgacaaagcacgtcatggagatgaacaagcacttgcaatcacgtttacta
gatttgatgcagaaccggttgctcttatctgcagactcaaccgcagctagaaagagaaaa
agggcgatgcttgagagttcaaggattcaggaagaggagcaatcacagttgccaagttat
caatga
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