KEGG   Vitis vinifera (wine grape): 100256013
Entry
100256013         CDS       T01084                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100256013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100256013
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100256013
Transcription machinery [BR:vvi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100256013
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 100256013
NCBI-ProteinID: XP_002283296
UniProt: F6H335
LinkDB
Position
4:join(6520947..6521420,6522386..6522601,6524640..6525532,6526567..6526858,6529639..6530586,6530884..6531155,6532509..6533010)
AA seq 1198 aa
MGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNE
YGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERP
RVWAGESDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVE
KKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICL
KRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFA
LGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKS
CKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLE
LAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQW
SHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWV
GVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVK
TFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLL
GLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMI
SDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH
IRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGR
CAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGV
LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFST
LSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTG
PVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNI
SNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC
NT seq 3597 nt   +upstreamnt  +downstreamnt
atgggggcatctgatgccaagggagatttgggcatgagcagtagtatgggtgaaaagctt
tcaaacggagtccaaatggaaatagatgatgatctgatgggctcaatcgagatagacgac
ttaaacaaagaatatttgaaaacattttgcaaaaaggttgcggtatcattctttaatgag
tatggactcattcagcatcagatcaactccttcaacgacttcatcaaaaatggaattcaa
agggtttttgattcttttggcgagatccctgtggagcctgggtatgacccatctaagagg
ggagagggtgattggagatacgcttctgtgaggttcgggaaggtcacccttgaacggccg
agggtatgggctggtgaatcagatggtaaggagtccctgaattttttgccgagacatgca
cgtcttcagaacatgacgtactcatctcggatgaaagctcaagttcatttccaggtatat
actcagaaacttgtaagaagtgacaagtacaaaactggaaaagacaacaagtatgttgag
aagaaggttatattcgaagataacagggacatattaattgggaggatccctgtgatggtg
aagtcagaactatgttggatgaatggtgtcgagagaggtgactgtgaatatgatcatgga
ggatattttttgatcaagggtgcagagaaaacattcattgcacaagaacagatttgtttg
aagagactgtgggtttccagtaatccaacttggatggttgcataccggccaatctggaaa
aggaaaagagtatatgttaaattagaacctccaaaagatgaaaataatagaggaggagaa
aaagttcttacagtgtatttttcatcaacagagattcccatttggatattgttttttgcg
cttggtgcatcgtcagacaaggaagttgttgatttgattgatttcaacattgatgatgct
ggtatttcaaatattcttgttgcatctattcatgaagcggacagggaagcagaaaagaaa
ggcatgtacttccgtagacaaggcaatgctatcagctttgtagataaacttgtgaaaagt
tgtaaatttcctcctggagaaagtattcaagaatgcattagcaagtatttgtttcccaac
tttagtggcgtcaagcaaaaggctcgctttcttgggtatatggtgaagtgtcttctacaa
gcctatactgggcgcagaaaatgtgataacagagatgatttcagaaacaaaagattagaa
ttggctggtgagctgcttgagcgagagcttagagtgcacattagacatgctgaaaggcgc
atggtaaaagctatgcagagagaactttatggagatcgtgacctgcgacctattgaaaat
tatctggatgcttccattatcaccaatggtctttccagggcattctcaactgggcaatgg
tcccatcctttcaagaggatggaaaggatatctggtgtagtggcaactcttagacgaaca
aatcccttgcagatgacagctgacatgaggaaaacacgtcagcaggtccaatacacagga
aaggttggggatgccagatacccacacccttctcactgggggaaggtttgctttctctct
actccggatggtgaaaattgtgggcttgtaaaaaatttggccattacaggacttgtctca
acagaggtattggatccattggttgataaattgtttgattgtggaatggagaaactggta
gatgatacctctaccaagctgtctggaaagaataaagtttttctggatggtgactgggtt
ggagtatgcgaagatcccatttcatttgttgtggagctaagaactaaacggcggcacaag
gaattgcctcaacaggtggaaatcaaaagagacgaacaacaaggagaagttcgcattttt
tctgacgctggaaggattctacgtcctctcttagtagttgagaatttaaagaaggttaaa
acatttaaaggggatgattttactttccagtctcttttggacaagggaatcgtggagctc
attggagctgaggaagaagaagattgctctacagcatggggcattaaatacctcttaaag
ggacatgatgacccaccggtgaaatacacacattgtgaacttgatatgtcttttttatta
gggttaagttgtggaataatcccttatgcaaatcatgaccatgcaaggagagtactatac
cagtctgagaagcactctcaacaggctattggtttttccacaacgaaccctaatattaga
gtggataccctctctcaccaactatactaccctcagaggccactttttcggacaatgatt
tctgattgtctgggaaaaccaggatattcagaaggtcataaaggaatagtgccaaggcct
gaatacttcaatgggcagattgccattgttgcagttaatgttcacctggggtacaaccaa
gaggactcattggtaatgaaccgggcttcattagagcgtggtatgtttcgttcagagcac
ataagaagttataaatctgaggtcgacaataatgaatcattggacaaaaagcgaaagtcc
gaggactctgtacattttggaaagatgcagagtaaaattggacgtgttgacagccttgat
gatgatggttttccattcatcggtgcaaacctgcagaatggtgatattgtcattggaagg
tgtgcagaatctggggttgatcacagcataaaactgaagcatactgagaggggcatggtt
caaaaggttgtggtgtcagcaaatgatgatggaaaaaattttgctgtagtatctctgaga
caggtccgaactccatgccttggagacaagttttcaagcatgcatgggcaaaagggtgtt
ctggggtttctagagtcccaggagaacttccctttcacaatacaaggaatagttccagat
attgtaataaacccacatgcatttccttcacgtcagactcctggtcaattgctagaggct
gctttgggaaaggggattgcctgtggtggtttgctgagacatgccacccctttctccacc
ctctctgtggatgcaatagcagatcaacttcacagggctggattttcaagatggggacat
gaaagggtgtacaatggacgcactggagaaatgcttcgctcactcatatttatggggcca
acattctaccagcgcctgattcacatggctgaggataaagtaaagttccgcaacacgggg
ccagtccacccgctcacccgtcagccagtgtcggatcggaagcgctttggtgggatcaaa
tttggggagatggagcgcgactgcctcattgctcacggtgctgcagcaaatctacatgaa
cgtctcttcaccctcagcgactcagcctatatgcacatctgtcggagatgcaagaatata
tcgaatgtgatccagcgttctgtggcgggtgggcggaaggtaaggggcccgtattgtcga
tactgcgagtcttctgaggaaatagtgaaggtgaacgtgccatatggggcgaagttgttg
tgccaggagctcttcagcatgggcatatctttgaagtttgagacccagctgtgttaa

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