Vitis vinifera (wine grape): 100256191
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Entry
100256191 CDS
T01084
Name
(RefSeq) RNA polymerase sigma factor SigA isoform X2
KO
K03086
RNA polymerase primary sigma factor
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100256191
Transcription machinery [BR:
vvi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
100256191
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
SbsC_C
Motif
Other DBs
NCBI-GeneID:
100256191
NCBI-ProteinID:
XP_010662046
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All DBs
Position
16:join(341642..342327,342796..342994,343081..343173,343263..343391,343489..343542,343651..343728,343818..343880,344082..344194,344373..344481)
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AA seq
507 aa
AA seq
DB search
MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT
PSSNRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQWN
LSFVGTVVGKEEEEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKS
RVRAALGVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTD
EQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIG
LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLE
EKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRL
ENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERV
RQVGLVALEKLKNAARKGRMEAMLVKY
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtacagctgcagtcatagggctgagtgctgggaacaggctcttggcctcctcc
caccactactctgatgttgcagagaagctctcctcctatgtgaatgatgttgggttcccc
caccacccatctcccccacccaagaatctcatatcagccaagaagccctcaaattatacc
ccatcttccaatcgcagcattcaatccatgaaagccctcaaggaacatgtggaatcagcc
tctgctccttctacagcagacccagatctctcctcctcctcctcagaggttgaggatgag
gagtacttggtggaggccttcctcttgttgcagaagtccatgcttgaaaagcagtggaat
ctttcatttgttggaacagtagtagggaaggaggaggaggaggaggaggaggaggaagag
gaggaggatatggggaagaaagcaaggcagaagaggagggaagtcacatgttctgggaca
tcggccaggcagaggaggattagtggtaggaaaagggtaatgaatgagaagagtaagagc
agggtgagggcagcgttgggggttgagaatcgattgaaggggtatgtgaagggggtggtg
agtgaagaactgctcacccatgctcaagtagttctcctctccaacaaaatcaaagctggt
cttttattagaggatcataagtccagactgaaggaaagaataggaagcgagccaacagat
gaacaagtggcggcatcgttgaggatgtcgagggcggagttgcagtccaaactgatagag
tgcagtttggcgagagagaaactagccatgagcaatgttcgtttggtcatgtctattgct
caaagatatgataacatgggtgctgaaatggccgaccttgttcagggtggcttgatcgga
ctccttcgtggcattgagaagtttgattcttccaagggcttcaaaatttccacttatgtc
tactggtggatacgccagggtgtctccagagcattagttgagaattcaagaaccctcaga
ttgccttctcatctccatgaaagactcagtttaatccgcaatgccaagattagactcgaa
gagaaaggaatcactccatccatcgatagaatcgccgaatgcttgaacatgtcccagaag
aaagttaggaacgcaactgaggccatcagtaaggtgttctcacttgatcgagaagcattc
ccctctttgaatggtcttcctggagaaacccttcacagttatattgcagatgttcgcctt
gagaacaacccctggcatggtgtagacgagtgggcactcaaggatgaagtaaacaagctg
attaacacgacgcttggggagcgggagagagatattatacgtctttactatggtctggat
aatgaatgcctcacatgggaggacatcagtaaacgcatagggttatcaagagagagggta
cggcaagttggacttgttgcattggagaaactaaaaaacgcagcacggaagggcaggatg
gaggccatgctggtgaaatattga
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