Vitis vinifera (wine grape): 100256296
Help
Entry
100256296 CDS
T01084
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100256296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100256296
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100256296
U7-dependent histone pre-mRNA processing factors
100256296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
RRM_10
partial_CstF
DUF8400
Motif
Other DBs
NCBI-GeneID:
100256296
NCBI-ProteinID:
XP_002264617
UniProt:
A0ABY9DVS3
LinkDB
All DBs
Position
18:complement(join(22322632..22322760,22334390..22334731,22335196..22335735,22335827..22335862,22339741..22339818,22339906..22340150,22340241..22340274,22343073..22343247,22346290..22346368,22346497..22346527))
Genome browser
AA seq
562 aa
AA seq
DB search
MASSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMVANVEPQKQVGGPAILGD
AALHQPVGLPLAMAASSVMAGALGGAQAGSKSNQNGFQSQAMLGSDPLTLHLAKMSRNQL
NEVISDLKVMATKNKELARQLLLTSPQLPKALFQAQIMLGMVTPQVLQMPNIRQASVPPT
QPVLQDGQQGQQLAVQTLSGLPPLAQSKMQLGLMPKGQEGQVSAMPHNSLVHSQFSALPQ
QPAQPQIQLPPQGHNQALQQATFAGQSGVTALPSVRPQPPAKLPVRPQIQVASSSSLKHQ
MQPPLLQQPGQFGSAKSGNNSQLVIPNATLRPTLMTRPSFPDSGFQPGSSTFSSIPETTN
NNADRSSQVTNNTYSNMPSGLSMKKSMARDTSEPMNHPSKMVKLDDGRRAPFSTVGLNLS
TSSASASASGPSQVLGIGSVSANQISKAEEVQHMDKKAPQLQLPPEIESALLQQVLNLTP
EQLSSLPPEQQQEVIQLQQMLR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttctcaacaccgctgcgtttttgttgggaacataccctatgacgctactgaa
gaacagcttattcaaatctgcgaggaggtcggtccagtcgtgtccttcagattggttatt
gatcgagaaacagggaagccaaaaggttatggattctgtgagtataaggatgaagagaca
gcattaagtgctcgtcgtaatcttcagggctatgagatcaatggccggcaattacgagtc
gattttgctgaaaatgataaaggtgctgaccgaaatagagaacagggtcgtggtgggcct
gggatggttgctaatgttgaacctcaaaaacaagtgggtggaccagcaatccttggggat
gctgctctgcatcagccagttggtcttccattggctatggctgcttcatctgtcatggca
ggagctctgggaggtgctcaggctggtagcaagtccaatcaaaatggttttcagagtcag
gcaatgttgggaagtgatcctttaactcttcatctagcaaaaatgtctagaaaccagctg
aatgaggtcatttctgacctgaaggtaatggctacaaaaaacaaggaattagcaagacag
ctactgctcacaagcccacagttgccaaaagctctttttcaggcgcagataatgctagga
atggtgactcctcaagtgttgcagatgcctaatattcggcaggcttcagttccacccaca
cagcctgtgttacaagatggtcaacagggtcagcagctagcagttcaaactcttagtggg
ctaccccctcttgcacagagcaagatgcagcttgggttgatgcccaaaggacaagaaggc
caagtgtctgccatgcctcataattctttggttcatagccagttttctgcacttccacaa
cagccggcacagcctcaaattcagcttccaccccaaggccacaaccaagctctacaacaa
gccacatttgctggacagtcaggagttacggcgcttccatctgtacgcccacagccgcca
gccaaattgcctgttaggccacaaattcaggtggcatcttcctcttctttgaagcatcaa
atgcaaccccctttgttacaacaaccaggacagtttggatctgcaaaatcagggaataat
agtcagctggttattccaaatgcaactcttcgacctacacttatgactcgtccttcattc
ccagattcaggctttcagcctggttcctcaacattttcgagcattccggagacaactaat
aacaatgctgatagatcttctcaagttactaataacacctattcaaacatgccttcgggg
ttatctatgaaaaaaagcatggcccgtgatacttctgaaccaatgaatcacccttcaaaa
atggtgaaattggatgatggacggagggcccctttttctactgtgggtttgaatttatct
accagttctgcatctgcatctgcatctggaccatcccaagttcttggaattggctcagtc
tctgcaaaccaaataagtaaagcagaagaagtgcaacacatggataagaaggcccctcag
ttgcagcttccacctgagattgagtcagccttgctgcagcaagtattaaacctcacacca
gagcagctaagttcactgccaccagaacagcagcaagaagtcattcagctccagcaaatg
cttcgatga
DBGET
integrated database retrieval system
