KEGG   Vitis vinifera (wine grape): 100256563
Entry
100256563         CDS       T01084                                 
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
  KO
K10683  BRCA1-associated RING domain protein 1
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100256563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100256563
   04121 Ubiquitin system [BR:vvi04121]
    100256563
   03036 Chromosome and associated proteins [BR:vvi03036]
    100256563
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100256563
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     100256563
Ubiquitin system [BR:vvi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    100256563
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     100256563
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     100256563
SSDB
Motif
Pfam: BRCT zf-C3HC4_2 BRCT_2 zf-HC5HC2H zf-RING_2 zf-RING_UBOX zf-C3HC4 zf-RING_6 zf-C3HC4_3 zf-C3HC4_4 RTT107_BRCT_5 zf-RING_5 zf-HC5HC2H_2 zf-RING_10 zf-Nse
Other DBs
NCBI-GeneID: 100256563
NCBI-ProteinID: XP_002273835
LinkDB
Position
10:join(12417707..12417762,12418382..12418435,12418547..12418617,12419191..12419304,12419884..12420371,12420625..12420735,12420881..12421969,12422129..12422229,12422561..12422747,12422865..12422965,12423080..12423206,12423293..12423458,12423585..12423703,12424362..12424712)
AA seq 1044 aa
MGDSSHLERMGRELNCPICLSLLNSAVSLTCNHVFCNSCIMKSMKSGSNCPVCKVPYGRR
EVRPVPHMDSLVSIYKSMEAASGINVFVTQNAPSTKLSDKQQTEGDQNCGGQKADNASEE
RARNQRKLKGKGPKRSLKTNPEDSGLNPAKPSFPGKKRVQVPQYPLSETPKRPAKLDGGL
SEMSKGGPKNNSVVLNEKPALNDNGELVFSPFFWLREDEDVENSSQQMDGDLTLSSSLPN
VPSFSDIKGSDDEMPSELTPKGKVDTEFNVADPFDSEIFEWTQRACSPELCSSPMEMQVP
DSDEFDEIQKGENKPDSQSATKEEEAPRTENMTGMNCKEGTGCAAMRLPAMSSPETKNAN
GQNGIGISKKRGRKSNKKGQKKRAKRGADEVLGIHINAQSVVEDFIPVQDCDKDGSSNLR
KKTHKGCEKACFDNNATGAAPENVSSVSVGSKSLNQDDENIITALPASLVKKHVSDENLN
LKKRGRRCANVNTQSQKGHTVRSKNQKLESAEDDMLEKGAITPNQINYDMFSHSPCVSLP
MADDGKASNRGEKASKHGRIISKVNQKRDKRLRPSKKLKVSTDDISKYGLIDDTQEGHTK
VSAKSTQPINNNQCNPEVRVLDYSSTAKKALSATSGGALRKCESIPNKISCAFCHSAQDS
EASGEMVHYFNGRPIAADHNGGSNIIHSHRNCTEWAPNVYFEDGTAVNLKAELTRSRRIT
CCCCGIKGAALGCYEKSCRKSFHFPCAKLTPQCRWDTDNFVMLCPLHASSKLPNEISGPP
AKTRKKCSTKGQSDIQRAQVAVKHDISTSQRWNSHGSPGKLVLCCSALTVAEKDIVSEFE
RLSGVTVLKKWGPGITHVIASTDENGACRRTLKFLMGILEGKWILNTEWIKACMKAKEPV
AEEQYEIGIDIHGIRDGPRLGRLRLLNKQPKLFNGFKFYFFGDFMPSYKGYLQDLVIAAG
GTVLHRKPILGNQETLSSGSSIYETFIIYSLELPEKCGPDMKNQIFTCRRSEAEALARST
GAKVASNSWFLNSIAACQVQNVSE
NT seq 3135 nt   +upstreamnt  +downstreamnt
atgggcgattcttcacacctggagaggatggggagagaactcaactgccccatttgtttg
agtttactaaattctgcagtttcgcttacatgcaatcatgtgttctgcaattcatgtatc
atgaagtcaatgaagtcaggttcaaattgcccagtttgtaaagtgccatatgggcgtcga
gaggttcgccctgtgcctcacatggatagcttggtcagcatctacaaaagcatggaagct
gcttcgggaatcaatgtttttgtcactcagaatgcaccatcaactaaattatcagataaa
cagcaaactgaaggtgatcaaaattgtgggggacaaaaagcagataatgctagtgaggag
agagcaaggaatcaaagaaaactgaaagggaagggaccaaaaagatcacttaaaaccaat
ccagaagattctggtctcaatcctgcaaaaccttcctttccaggcaagaaaagggttcag
gtgccacagtatcctctgtcagaaacccccaaacggcctgcaaagttggatggtggtttg
agtgaaatgagcaaaggtgggcctaagaacaattcagttgtactaaatgagaaacctgct
ctaaatgacaatggagaactggtattttcaccttttttctggttgcgagaggatgaagat
gtagaaaactcaagtcagcagatggatggggatcttaccttgagctcatcactgccaaat
gttccttctttcagtgatatcaagggttcagatgatgaaatgccttctgaattgacccca
aaagggaaggtggataccgaattcaatgttgcagacccatttgatagtgagatatttgaa
tggacacaaagagcttgctcccctgagctctgttcaagtcccatggaaatgcaggttcca
gattctgatgaatttgatgaaattcaaaaaggggaaaataaaccagattcacagagtgca
actaaagaagaggaagctcctagaacagagaacatgactggcatgaactgcaaagaagga
acaggctgtgcagctatgagattgcctgctatgtcctccccagaaaccaaaaatgccaat
ggtcaaaatgggattggaatatccaaaaagagaggtaggaaatcaaataaaaagggtcaa
aagaaacgtgccaagagaggtgctgatgaagttcttggaatccatattaatgcacagagt
gtagttgaagattttattccagtacaagattgtgacaaggatggcagttcaaatttgagg
aaaaaaactcacaaagggtgtgagaaggcttgctttgataacaatgctactggtgcagca
ccagaaaatgtttccagcgtatctgttggatcaaaatctctgaatcaggatgatgagaat
ataattactgcattgcctgcttcattagttaagaaacatgtcagtgatgaaaatcttaac
ttaaagaaaaggggcagaaggtgtgctaatgtcaacacccagagccagaaaggtcatact
gtaagatctaaaaatcagaagttagaatctgctgaggatgacatgcttgagaaaggtgca
attaccccaaaccaaataaattatgatatgttctcccattcaccttgtgtttctttgcct
atggctgatgatgggaaagcttctaatcgcggtgagaaagccagcaaacatggcagaata
attagtaaagttaatcagaagcgtgataaaagattgagaccttcgaaaaagttgaaggtt
tcaacagatgatatctcaaaatatgggttgatcgatgacactcaagaaggccataccaag
gtttctgcaaagagtacccaaccaattaataacaatcaatgcaatcctgaagtcagagtt
cttgattattcatcaacagcaaagaaggctctttctgccactagtggaggggctttgcgg
aaatgtgagagcattcctaataaaattagttgtgctttttgtcattctgctcaagattca
gaggcttcaggagagatggtccactacttcaatgggaggcccattgcagcagatcacaat
ggaggatctaacatcatacattcgcacaggaactgcacagaatgggcccctaatgtttat
tttgaggatggtaccgcagtcaatctcaaagctgaattaacaagaagtcggaggattaca
tgctgctgctgtggtatcaaaggggcagctctaggttgctatgagaagagttgtcgcaaa
agctttcattttccttgtgcaaagctaaccccacaatgtcgatgggatactgacaacttt
gtcatgttgtgtcctcttcatgcctcttctaagttgccaaatgaaatttctggacctcca
gcaaaaactagaaagaaatgcagtacaaaaggacaatcagacattcaacgagctcaagtt
gctgttaaacatgacatcagtactagtcagcgctggaattcccatggatcacctggtaaa
ttggtcctttgttgctcagctctcacagttgcagagaaggatattgtttcagaatttgag
aggttatctggagttacagtgttgaagaaatggggtccaggtatcacccatgtcattgca
tcaacagatgaaaatggagcatgcagaagaaccctaaaatttttgatgggtatcttggag
ggaaagtggattctgaacactgagtggattaaagcttgcatgaaagcgaaggagcctgtt
gcagaggagcagtatgaaattggtattgacattcatggaatcagagatggtcctcgactt
gggagactaagactcctgaataagcaaccaaagcttttcaatggctttaagttctatttc
tttggagacttcatgccttcatacaagggctacctacaagatcttgtaattgcggctgga
ggaactgttttacatagaaaacccattttgggaaaccaggaaactctatcatctggatcc
tccatatacgaaactttcataatttacagccttgaactgcctgagaagtgtggtcctgac
atgaagaatcagatttttacctgccgccgatctgaagctgaggcccttgcaagatcaacc
ggagccaaagtagcaagcaattcatggtttctgaactccattgctgcttgccaggtgcaa
aatgtttctgagtaa

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