Vitis vinifera (wine grape): 100257009
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Entry
100257009 CDS
T01084
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03013
Nucleocytoplasmic transport
vvi03015
mRNA surveillance pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100257009
09122 Translation
03013 Nucleocytoplasmic transport
100257009
03015 mRNA surveillance pathway
100257009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100257009
03041 Spliceosome [BR:
vvi03041
]
100257009
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100257009
TREX complex
100257009
Spliceosome [BR:
vvi03041
]
Complex C
Other components
EJC/TREX
100257009
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100257009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
100257009
NCBI-ProteinID:
XP_002276497
UniProt:
D7TSN8
LinkDB
All DBs
Position
14:join(16024743..16024940,16025765..16025905,16025988..16026056,16026745..16026935,16031496..16031546,16037846..16038005)
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AA seq
269 aa
AA seq
DB search
MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGIPPRRGPLRVNARPS
SYAIAKSSRRTKIPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIG
DIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPVS
ARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAGSRGRGR
GRGRKQPVEKSAVELDKELDNYHAEAMHT
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggctacttccttggatatgtcacttgatgatataataaagaggagtaacagcgagaga
gttagaggacggggtagagctcgccgtggtcgagggccaataggagggtcttttaacggt
ggaagaatgtcaggaattcctcctcgtagaggtcctcttagggtgaatgctcggccatca
tcttacgcaattgccaagtcatcccgcagaaccaagattccatggcagcatgatctgttt
gaagatagccttcgagctgcagggttgccaggtttagaagctggcacaaagttgtatatt
tccaacctggactatggtgtgaccaatgaagatataagggaacttttctctgagattgga
gacataaaaagatatgcagttcattatgagaaaaatggacgcccaagtggttcagctgaa
gtagtttataccagaagaagtgatgcatttgctgctgttaaacgatataataatgttctt
ttggatggaaaacctatgaagattgaaattataggaagtgattcagacatgcctgtttct
gctcgtgtgaatgtaattggaggggtaaatggaaagaggagaaggacagttgttatgacg
cctggagtgggtcatgccagaggctccactgcaatcaatcgtagttctagtcgaaggggt
cgtgggggtttgagcaatggccgtgggcgtggccgtgctggtagtcggggtcgtgggcgt
ggccgtgggaggaagcaacctgttgagaaatcagctgttgaactcgacaaagaactggac
aattaccatgctgaagccatgcacacttga
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integrated database retrieval system
