Vitis vinifera (wine grape): 100257081
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Entry
100257081 CDS
T01084
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03013
Nucleocytoplasmic transport
vvi03015
mRNA surveillance pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100257081
09122 Translation
03013 Nucleocytoplasmic transport
100257081
03015 mRNA surveillance pathway
100257081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100257081
03041 Spliceosome [BR:
vvi03041
]
100257081
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100257081
TREX complex
100257081
Spliceosome [BR:
vvi03041
]
Complex C
Other components
EJC/TREX
100257081
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100257081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Btz
RRM_3
Motif
Other DBs
NCBI-GeneID:
100257081
NCBI-ProteinID:
XP_002284215
UniProt:
D7SKJ4
LinkDB
All DBs
Position
6:join(5345905..5346069,5346202..5346348,5348177..5348245,5348330..5348514,5352372..5352537)
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AA seq
243 aa
AA seq
DB search
MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARRLPNRGANRITPYSVSKAPETT
WQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY
DRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVTNGTF
GNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAM
QIN
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacgctttggacatgtctctcgatgatctcatcaagaacaataaacgatccgga
ggcggtggcaacgccagaggccgcggccgcggctctggacctggccctgcccgtcgtctc
cccaatcgcggcgctaatcgaatcacaccctattccgtgagcaaggcgccggagacgaca
tggcagcatgatatgtttgcagatcaggcggcggcctatccggcgcaagccggtaggact
tcggccattgaaacaggaacgaagctttatatttctaacttggattatggcgtctcgaat
gaggatatcaaggaacttttttcagaggttggtgacctgaaaagatattcaatccattat
gatcggagtgggagatcgaagggaacggcagaggttgtcttctcccgacgaggagatgct
gtagcagctgtcaagagatacaacaatgttcagcttgatgggaagccaatgaaaatagaa
atcgtgggaacaaatattgcaacacctgctgctgtgcctcctgttactaatggaactttt
ggaaattcaaatggtggtctcagaagtgcccaaggaagggttggttcacagggacggcca
cgtggtggcagtggcggccgtggatttggaagggggcgtggacggggaagaggccgtggt
gaaaaggtgtctgcagaggatcttgatgctgatttggagaagtaccactctgaagcaatg
cagataaactga
DBGET
integrated database retrieval system
