KEGG   Vitis vinifera (wine grape): 100257193
Entry
100257193         CDS       T01084                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100257193
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100257193
Spliceosome [BR:vvi03041]
 Complex C
  Other components
   Complex C specific factors
    100257193
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C AAA_22 DEAD HA2_N AAA_19 AAA_30 AAA_7 ResIII Cas3-like_C_2 nSTAND3 AAA_29 AAA_11 AAA_23 T2SSE SRP54
Other DBs
NCBI-GeneID: 100257193
NCBI-ProteinID: XP_010655487
UniProt: D7TJH8
LinkDB
Position
10:join(7157849..7157949,7158046..7158190,7158874..7158948,7160906..7160995,7161225..7161304,7162869..7162938,7163050..7163135,7164432..7164498,7164666..7164761,7168117..7168222,7176278..7176324,7176440..7176523,7176624..7176677,7177372..7177472,7179757..7179847,7179967..7180131,7182428..7182517,7182809..7182880,7186930..7187028,7187199..7187285,7188786..7188839,7189021..7189100,7189387..7189531)
AA seq 694 aa
MSQFWKPGSEKPRLLDDEEGGVLFYSASASSSSGFGYSNIEKQRQRLPVYKYRTAILYLV
ETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMGVK
LGEEVGYTIRFEDLSKTGVTMVKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSLSTDI
LLGLLKKIQRRRPELRLIISSATIEAKSMSTFFQTRKRRGLEGEESGPRTDPAILSVEGR
GFNVQIHHIEEPVPDYLQAAVSTVLSIHEQEPMGDILVFLTGENDIDAAVQLLNEEAQNN
GKHSSGLVVLPLYSGLSRADQDLVFSPTPRGKRKVVISTNIAETSLTLEGIVYVVDSGFS
KQRFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVNEMSAHAIPEM
QRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGVLDDDAKLTSPLGFQ
VAEIPLDPMISKTILSSNQLGCSEEIITIAAILSVQSIWVSARGAQRELDEAKMRFAAAE
GDHVTYLSVYKGFIQSGKSSQWCYKNFINYHAMKKVIEIREQLRRIAQRLGIVLKSCERD
MEVVRKAVTAGFFANACCLEAHSQGGMYKTIRSAQEVYIHPSSVLFRVNPKWIIYNSLVS
TDRQYMRNVISIDPSWLMEAAPHFYRQQRNPIAS
NT seq 2085 nt   +upstreamnt  +downstreamnt
atgagtcagttctggaaaccaggatcggagaagcctcgcctcctcgacgacgaggaaggc
ggagttctcttctactccgcttctgcttcttcctcctctggatttgggtattcgaacatc
gagaagcagaggcagaggcttccagtctacaagtaccgaaccgctattctctatttagtg
gagactcacgccaccaccattattgttggagagactggtagtggaaaaaccacccagatt
ccgcagtacctcaaagaagcaggttgggcagatggtggccgtgtaatagcttgcacccaa
ccaagacgtcttgctgtccaggccgttgcttcaagggtggctgaggagatgggtgtcaag
ctaggggaggaagttggctatacaattcgatttgaagatcttagtaaaacaggtgtaacg
atggtaaaatttctcacagatggggtgttactaagggaaatgatggatgatcccctttta
acaaagtatagtgtcataatggtagatgaggctcatgaaaggtccctgtcaacggacatc
ttattaggtctcctgaaaaagatccaacggcgtcgacctgagctgcgtctgataatctct
tcagctacaattgaagcaaaatcaatgtccactttcttccagaccagaaagcgtcgaggt
ctggaaggtgaggagtcaggaccaaggacagatcctgccattctatcggttgagggtaga
ggatttaatgtgcaaattcatcatattgaggagcctgtcccagactatcttcaagctgct
gtttcaactgttttgtcaattcatgaacaggaacctatgggcgatattctggtatttctc
acaggtgaaaatgatatagatgctgccgtccagttgcttaatgaagaagctcaaaataat
gggaagcactcttcaggattggttgttttgcctttgtactctggactctcacgtgcagat
caggaccttgtattttctcctactcctagaggaaagaggaaagtggtgatatcaacaaat
attgcagagacatcattgactttggagggcattgtctatgttgttgatagtgggttctca
aaacagcgattttataatccgatatcagatattgaaaatttggttgtggcaccgatatcc
aaggcatctgctagacaaagggctggtagagctggaagagtgcgaccagggaagtgttac
aggctatacacagaagagtattttgtcaatgagatgtcagctcatgctattccagaaatg
cagagatcaaaccttgtttcctgtgtgattcagttgaaggctttaggcatagataatata
ctaggctttgattggccggcgtctccatcacctgaagcaatgattagagcacttgaagtg
ctctattcactaggagttcttgatgatgatgccaaacttacttcacctcttgggtttcaa
gttgcagagattccactagatccaatgatctcaaaaacgatattatcttcaaaccaactt
gggtgttctgaggagatcatcactattgctgccattctttctgttcagtctatctgggtt
tctgctcgaggagcacaaagggagctggatgaagccaagatgagatttgctgctgctgag
ggtgaccatgtgacctacctaagtgtatacaaaggatttattcaatcgggtaaatcttca
cagtggtgctataagaactttataaactaccatgcaatgaaaaaagtgattgaaattaga
gaacaactcagaagaatagcacaacgattgggcatagtcttaaaatcttgtgaaagagat
atggaggtggtaaggaaggcagtcactgctgggttttttgctaatgcttgctgcttagaa
gcacacagtcaaggtggaatgtacaagaccattagaagtgcccaagaagtttatattcat
ccatcatcagtattattcagagttaatccaaagtggattatatacaattctcttgtctca
actgatcgacaatacatgcgcaatgtcatttccatagacccttcttggcttatggaggct
gctccacatttttaccggcaacaacgcaatcctattgcttcttga

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