KEGG   Vitis vinifera (wine grape): 100257584
Entry
100257584         CDS       T01084                                 
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
  KO
K12856  pre-mRNA-processing factor 8
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100257584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100257584
Spliceosome [BR:vvi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100257584
 Complex C
   U5 SnRNP specific factors
    100257584
SSDB
Motif
Pfam: PROCN PRP8_domainIV U6-snRNA_bdg PRO8NT U5_2-snRNA_bdg PROCT RRM_4 JAB
Other DBs
NCBI-GeneID: 100257584
NCBI-ProteinID: XP_003632762
UniProt: A0ABY9CHC0 D7U143
LinkDB
Position
9:complement(join(6931750..6931941,6932083..6932325,6932504..6932782,6932871..6933068,6933178..6933339,6933741..6934214,6934300..6934554,6934663..6934769,6934853..6935469,6935927..6936180,6936465..6936572,6936674..6936863,6936951..6937074,6937282..6937523,6938122..6938248,6938342..6938796,6938886..6939190,6939284..6939598,6939803..6939985,6940069..6940154,6940273..6941063,6941163..6941649,6942673..6943063,6943331..6943423,6943530..6943653,6944712..6944953))
AA seq 2347 aa
MWNSGQIAPPGTGGSTIPPPPAAQPSYTVLPSPAEAEARLEEKARKWMQLNSKRYGDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITTINKDRREKKNYEEEDDDDFFLPEEVEPLLTKTALYSDTTAAGISLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKELTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLAQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHIW
PSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDG
EKCIILTCSFTPGSCSLTAYKLTPTGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEG
DREDTFT
NT seq 7044 nt   +upstreamnt  +downstreamnt
atgtggaacagcggccagattgcgccgcccggcaccggcggctccacgattccacctcct
cctgcagctcagccttcgtacacggtcttaccgtcgccggcggaggccgaggctaggctt
gaagaaaaggcgcgtaaatggatgcagctgaattcgaagcggtatggcgacaagaggaag
ttcgggttcgtggagacacagaaggaggatatgcctccggagcatgttaggaagattatc
agagaccatggggacatgtcctcaaaaaaatatcgtcatgataaacgtgtatatcttgga
gcccttaaattcattccacatgcagtttacaagcttcttgaaaacatgccaatgccttgg
gaacaggtccgtgatgtgaagattttataccatattactggagcgatcacatttgtaaat
gaaataccatgggttgttgaacctatatatttagctcagtggggtacaatgtggatcatg
atgcgaagggagaagagggatcgtcggcatttcaagagaatgcggtttcccccatttgat
gatgaggaacctccattggactatgctgataatctgttagatgtggaccctttagagcca
attcaattagagttagatgaagaagaagattctgctgtttacacttggttttatgaccat
aagcctcttgtcaaaacaaagcttataaatggccctagttaccggaaatggcatctttcc
ctcccaatcatggcaactcttcatcgacttgcaggccagctgctttctgatttaattgac
cgcaattatttctacttgtttgatatggagtcattctttacagctaaggcactgaacatg
tgcatacctggaggacctaaatttgagcccttatatcgcgacatggagaagggagatgag
gactggaatgaattcaatgacattaacaagcttatcattcggtcaccactcaggacggaa
tatagaattgcattccctcatctttataataataggcccaggaaagtaaagctttgtgtg
tatcatactcctatgattatgtacattaaaactgaggatcctgatttacctgcgttctat
tatgatcctttgatacaccctatcaccaccattaacaaggaccggcgtgagaaaaaaaat
tatgaagaagaggatgatgatgatttctttttgccagaagaggtggaacctttgttaaca
aaaacagcactttatagtgacaccacggctgcaggtatttcactgttgtttgcaccacgc
ccttttaatatgagatctggtcggatgaggcgggctgaagatataccccttgtgtcagag
tggtataaggaacactgccctccatcatatccggttaaagttcgggtcagctaccagaaa
ttgttgaaatgttttgtgttgaatgagctgcatcacagaccacccaaggctcagaagaaa
aaacacttgttccggtctctccaagctacaaagttcttccaaactacagaactagattgg
gctgaagcgggtctccaagtttgtaagcaagggtataacatgttgaatctgttgatacat
aggaaaaatttgaattaccttcatcttgattataattttaatctgaagccggtgaagact
ctcactacaaaagaacgtaaaaagtcacgatttggtaatgcttttcatctctgccgtgaa
atccttcgtttgacgaagcttgtagttgatgccaatatccagttccgtttgggaaatgtg
gatgcattccaattggctgatgggttgcaatatacattttcacatgttggccagttgact
ggaatgtaccgctacaagtacaggcttatgcggcagatcagaatgtgcaaggacttgaag
cacttgatttattaccgcttcaatactggacctgtggggaaaggcccgggatgtggattc
tgggcaccaatgtggagggtgtggctgttcttccttcgtggtatagtgcctctgttggaa
aggtggttgggaaatttacttgcacggcaatttgaagggcgccattcaaagggggtggcc
aagactgttacaaagcaacgtgtcgaaagccatttcgacttggagcttcgagctgctgtt
atgcatgatgttcttgacgctatgccagagggcattaagcagaataaagcaagaactatc
ctgcagcatcttagtgaagcgtggcgttgttggaaagcaaatattccatggaaggtgcct
ggtttgccagttcccattgagaatatgattcttcgttatgtcaagtcaaaagcggattgg
tggacaaatgttgcccactataatcgtgaacgtataagaaggggtgctacagttgataag
acagtttgtcgaaagaaccttggtagattgactcgcctttggctgaaggcagaacaggaa
cgccaacataattacttgaaggatggtccatatgtcacaccagaagaagcagtggccatt
tacactaccactgtgcattggttagagtcaagaaagttctccccaattccattccctcca
ttgtcttacaagcatgacacaaagcttcttatccttgctttggagagattgaaggaatcg
tacagtgtggctgtgaggttaaaccaactacagagagaagagttgggtcttattgaacaa
gcttatgataatccacatgaggctttatcacggattaagcgtcacctgcttacacagcgt
gccttcaaagaagttggcattgagttcatggacctgtatagttatctaattccagtttat
gagattgaacctcttgagaagatcacagatgcatatcttgaccaatatttatggtatgaa
ggtgataagcgtcatctctttccgaactggattaagcctgcagattcagagccacctccg
cttttagtgtataaatggtgtcaaggtataaacaatttacaaggaatatgggacacaagt
gacgggcaatgtgtagtcatgcttcaaacaaagtttgagaagttctttgaaaagattgat
ttaacaatgttaaacaggcttctacgcttagttcttgaccataatattgctgattatgtc
actgcaaagaacaatgttgtgctgtcttacaaggacatgagtcacactaactcatatggc
cttatacgtggtcttcagtttgcttcatttgttgtacagtattatggacttgtgttggat
ctcttgcttcttggattgactagagccagtgaaattgctggtcctccacagatgccaaat
gagttcattacttattgggataccaaagttgaaacccggcatccaattcggttgtattct
aggtacattgacagggtacatatattgttccgctttacccatgaagaggctcgggatctt
attcagcggtatctcactgagcatcctgatccaaacaatgaaaatatggttggatataac
aataagaagtgttggccaagagatgccagaatgaggctcatgaaacatgatgtcaatctt
gggagaagtgtgttctgggatatgaagaatcgtcttcctcgaagtatcacaacattagag
tgggagaacagctttgtatctgtatacagcaaggacaatccaaacttgcttttcagcatg
tgtggatttgaagttcggatactgcctaagataagaatgacccaagaggcattcagcaat
accagagatggagtttggaatttgcagaatgaacagaccaaagaattgactgctgttgca
ttcttgcgggttgatgacgagcacatgaaagtgtttgagaatcgtgtaaggcaaatcctt
atgtcttcaggatcaacaacattcacaaaaattgtcaacaaatggaacacggctctaata
ggtctcatgacatatttccgtgaagcaacagtccatactcaagaactgttagatttgctg
gtcaaatgtgaaaataaaattcaaacccgtatcaagatcggattgaattcaaaaatgcct
agcaggtttcctcccgtgattttttacaccccaaaagaaattggaggacttggcatgtta
tcaatgggtcacatattgattcctcaaagtgatctcagatacagtcagcagactgatgtt
ggtgtaactcattttaggagtggaatgagtcatgaagaagaccagctgattccaaatctt
tatagatacatacaaccatgggagagtgagttcatagattcacagcgtgtttgggctgag
tatgcactgaagaggcaggaagcacagtcacaaaacaggagattgacccttgaagatctg
gaagattcatgggataggggaatacctcgtatcaatactttgttccaaaaggatcgtcat
accctggcatatgacaagggatggagagtgcgcactgattttaaacagtatcaagttttg
aaacagaaccctttctggtggacacaccagcggcatgatggaaaactatggaacttaaat
aactatcgaactgatgtcatccaagccctcggaggagtggagggaattcttgagcatacc
ttattcaaaggaacatactttccaacttgggaaggtctgttctgggagaaggcttccggt
tttgaggagtccatgaagtataagaagctgactaatgcacaacgatctggtctcaaccaa
attcctaaccgtaggtttaccctttggtggtcacctacaataaatagggccaatgtttat
gtgggtttccaagtgcagttagatctaactggaatattcatgcatgggaagattccaaca
ttgaaaatatcattgattcagatattccgtgctcatttgtggcaaaaggttcatgaaagt
gttgtcatggatctctgtcaagttttggatcaggagttggatgccttggaaattgagact
gtgcaaaaggaaaccatccatccaaggaagagttataaaatgaacagttcttgtgctgac
attctcctctttgctgcccatagatggcccatgtcaaagcctagtttagtggctgagtca
aaggatgtgtttgatcagaaagcaagcaataagtactggatagatgtgcagctccgctgg
ggggattatgattctcatgatattgagcgttatactcgtgccaaatttatggattataca
acagataacatgtctatttacccatctccaaccggggtgatgattggtattgatcttgct
tataacttgcattctgcatttggtaactggtttcctgggtcaaaaccactgcttgctcag
gcaatgaataagatcatgaagtcaaatccagctttatatgttttgagagagcgtataagg
aaagggttgcagttgtattcttcagagcctacagaaccatatttgtcatctcaaaattat
ggggaaatctttagcaatcaaataatatggtttgtagatgataccaatgtgtatcgtgtc
acaatccataagacatttgaaggaaatctcacaactaaacctatcaatggtgccatcttc
atatttaatccgaggactgggcagctgtttttaaaggtcattcacacaagtgtgtgggca
ggacagaagcgtcttggccagctggcaaagtggaaaacagcagaagaagtggctgctctt
gttcggtctctgcctgtggaagaacagccaaagcaaatcattgtgactcgtaaaggaatg
ctggatcccttggaggtccacttgctggatttccccaatatagttattaaaggaagtgaa
ctgcaacttccgttccaggcttgcttgaagattgagaaatttggtgatctaatcttgaag
gctacagagccacaaatggttttgttcaatatctatgatgattggttgaagagtatttcc
tcctacactgcattctcccgactcattttgattctgcgtgcacttcatgtgaacaatgag
aaggcaaaaatgttactaaagccagacaaaacaattgtcacagagccacatcacatctgg
ccttctctcactgatgaccaatggatgaaggttgaggttgctttgagagatcttatactc
tctgattatgccaagaagaacaatgtgaacacatcggccctgacacaatctgagattcgt
gatattattcttggagctgagattactccaccttctcaacagagacaacagatagctgag
attgagaaacaggcaaaagaagcaagtcagctgacagctgtcacgacaaggaccacgaat
gtgcatggtgatgaactcattgtcaccaccacaagtccatatgagcaatctgcatttgga
tcaaagacagattggcgagtaagagcaatctcagctacaaatctctatcttcgggtcaat
catatttatgtgaattcagaggacataaaggaaacagggtatacttacattatgcctaaa
aatattttgaagaaatttatctgcatagcagatttgcggacacaaatttcaggttacttg
tatggtataagcccaccagacaatcctcaggttaaggaaattcgctgtattgccatgccg
ccacagtggggtacccatcagcaagtgcatctcccatctgctcttcctgagcacgatttc
ctgaatgatttggagcctttgggatggatgcatacacaaccaaatgagctgcctcaatta
tcaccacaggatctcacttctcatgctcggattcttgagaacaacaagcagtgggatgga
gagaagtgtatcattcttacctgcagttttactccaggttcttgctcattgactgcatat
aagctcaccccaactggatacgagtggggtcgtgtgaacaaggacactggaagcaatcct
catggttatctgccgacgcattatgagaaggtccaaatgcttttgagtgaccgattcctt
ggtttctatatgattcctgataacggtccctggaattacaacttcatgggagtgaaacat
acagtgagtatgaagtatgggatcaagctcgggacaccacgagaatactatcatgaagac
cacaggccaactcatttcctggagttcagcaacttagaggagggtgagatggcggaggga
gatcgtgaggatacatttacctag

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