KEGG   Vitis vinifera (wine grape): 100257752
Entry
100257752         CDS       T01084                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100257752
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100257752
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     100257752
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_Vps41 Beta-prop_DCAF12 WD40_RFWD3 eIF2A Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_SPT8 Cytochrom_D1 Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_WDR11_1st Beta-prop_WDR75_2nd Tricorn_2nd CFAP43_N Beta-prop_pof12 Beta-prop_ACSF4 WD40_like DUF5711 PD40 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 100257752
NCBI-ProteinID: XP_002280723
UniProt: D7TCK8 A0ABY9CR35
LinkDB
Position
11:complement(join(1380465..1381091,1385438..1385776))
AA seq 321 aa
MKLAGLKSIENAHDESVWAAAWVPATESRPALLLTGSLDETVKLWMPDELVLQQNNTGHC
LGVVAVAAHPSGIIAASASLDSFVRVFDVDTNATIATLEAPPSEVWQMQFDPKGSILAVA
GGSSASIKLWDTATWKLIDTLAIPRPESSKPTDRGGNKKFVLSVAWSPDGRRLACGSMDG
TISIFDVNRAKFLHHLEGHYMPVRSLVYSPVDPRVLFSASDDGHVHMYDAEGKSLIGAMS
GHASWVLSVDVSPDGAAIATGSSDKTVRLWDLNMRAAVQTMSNHADQVWGVAFRPPGGAG
VRAGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaactcgccggcctgaaatccatcgaaaacgctcatgacgaatcggtgtgggccgcc
gcatgggttccggccaccgaatcccgaccggcgctcctcctcactggctctctcgacgag
accgtgaagctctggatgcctgacgagctcgtcctgcagcaaaacaacactggccactgc
ctcggcgttgtcgccgttgctgctcacccatctggcatcatcgccgcctccgcttcgttg
gacagcttcgttcgcgtttttgatgtcgataccaatgctacaattgccactctggaagct
cctccctctgaagtgtggcaaatgcagtttgatcctaagggttctattctagcagttgca
ggtgggagtagtgcatcaatcaaactctgggacactgccacatggaaactgattgacacc
ctggccatacctcgtccagaaagctctaagccaaccgatagaggtggcaacaagaaattt
gtcctttcagttgcatggagtcctgatgggagacgactggcttgtggctcaatggacggc
accatttctatatttgatgtaaaccgtgccaaattccttcatcacctggaaggtcactac
atgcccgtgcgatctctcgtgtattcccctgttgatcctagggtactcttttcggcctca
gatgatggccatgtgcacatgtatgatgctgagggaaagagcctgattggagccatgtca
ggtcatgcaagctgggtgttgagtgtggatgtgagtccagatggggcagcaattgccaca
ggttcaagtgacaagactgtaagactctgggaccttaacatgagggccgctgtgcagaca
atgagcaaccatgctgaccaggtgtggggcgtggcattccgtccaccagggggagctggt
gttcgggctggtcgacttgcaagtgtatcagatgacaagagtatatcactgtacgattac
tcctaa

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