Vitis vinifera (wine grape): 100258021
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Entry
100258021 CDS
T01084
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vvi01009
]
100258021
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100258021
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
100258021
Protein phosphatases and associated proteins [BR:
vvi01009
]
HAD phosphatases
Fcp/Scp phosphatases
100258021
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
100258021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
100258021
NCBI-ProteinID:
XP_002280625
UniProt:
D7UA85
LinkDB
All DBs
Position
14:join(577173..577761,578175..578843,578956..579149,579239..579502,580070..580228,581443..581547)
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AA seq
659 aa
AA seq
DB search
MAGDQPIAVKDAVHKLQLFLLEGIQNENQLFAAGSLMSRSDYEDVVTERTIANLCGYPLC
SNSLPSERLRKGHYRISLKEHKVYDLHETYMYCSSGCVVNSRSFAGSLQEERCSVLNSER
INGILRLFGESSLESNKILGKHGDLGLSELKIRENVEKKAGEVSMEDWIGPSNAIEGYVP
QRDRNLKPKNIKNRKEGSKSSNSKMDSGKNFVIDEMDFVRTIITEDEYSISKSSKGLKDT
TSHAKSKEPKEKASIGDQLSMLEKSAPPIQNDSESKLRESKGRRSRVIFKDEFSTAEVPS
VPSQSGSELNGVKGKEEYHTENAAQLGPTKLKSCLKPSGGKKVTRSVTWADEKMDSADSR
DFCKVRELEVKKEDPNGLGDIDVGDDDNALRFASAEACAIALSQAAEAVASGETDMTDAV
SEARIIILPHPRDMDEGESLKDADLLEPEPVPLKWPIKPGISHSDIFDSDDSWYDTPPEG
FSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTDGRSSEI
KQTLAGCLARALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQVIVLLF
IDALSVCQIPALTPHMISKRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFSAQSGG
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggatcagcctattgctgtgaaagatgcagtacacaagctgcaactgttcctt
cttgaaggaattcaaaatgaaaaccaactatttgcagctgggtctttgatgtcccggagt
gactatgaagatgttgtgactgagcgtacgattgcaaatttgtgtggttatcctctctgc
agcaattctctgccatcagagaggctgcggaaaggccattaccgcatttcgctgaaggag
cacaaggtttatgacctccatgagacgtacatgtactgctcgtctggttgtgtggttaac
agcagatcatttgcagggagtttgcaggaagagaggtgctcagttttaaactcagagaga
attaatggaattctgaggttgtttggggaatcaagcttggaatccaataagattttggga
aaacatggggatttagggttgtcggaattgaagatacgtgagaatgttgaaaagaaagct
ggggaagtgtctatggaagactggatcggtccatcaaatgcaattgaaggttatgttcca
cagagggatcgcaatttgaagcccaaaaatattaaaaatcgtaaagaagggtctaaatct
agcaactccaagatggacagtggaaaaaattttgtgattgatgagatggactttgtccgt
accataatcaccgaggatgagtacagcatttcaaaaagttctaaaggtttgaaagacact
acttcccatgcaaaatcaaaagaaccaaaagaaaaggcaagcataggggatcaactttcc
atgttagaaaagtcagctcctcctatacagaatgattctgaaagtaaattaagagaatca
aaagggaggaggagtagggttattttcaaagatgagttcagcacagcggaagttccttca
gttcccagccaaagtggttctgagttaaatggtgtgaaagggaaggaggaatatcatact
gaaaatgcagcacaattgggtcccaccaagctaaaatcctgtctgaaaccttcaggtgga
aaaaaagtaactcgctctgttacttgggctgatgagaaaatggacagtgcagacagtaga
gatttttgtaaagtgagggaattggaggtcaagaaagaagatcctaatgggttaggggat
atagatgtgggagatgatgataatgctttaagatttgcatcagcagaagcatgtgcaata
gcattgagccaggcagcagaagctgttgcatctggagaaactgatatgactgatgctgtg
tctgaagctagaattatcatattgccacatccacgtgatatggatgaaggggaatctcta
aaggatgctgatttgcttgaacctgaaccagttcctttgaagtggccaataaaacctgga
atttcacattcagatatatttgattctgatgattcttggtatgatacgccaccagaaggg
ttcagtttgactttgtcaccatttgcaacaatgtggatggcactctttgcatggataaca
tcatcttctattgcttatatatatggacgggatgaaagtttccatgaggagtatttatca
gttaatggaagggagtatcccaaaaaaattgttttgactgatggccgttcttctgaaatt
aagcaaactctagcgggttgtctggctcgggctttgcctggacttgttgcagatctcaga
ttgccaataccagtgtcaaatctggagcagggagtggggcgcttgttggatacgatgtct
tttgttgatgcacttccatcattcagaatgaaacagtggcaagtgattgttcttttgttt
atcgatgccctctctgtttgtcagattcctgcacttactccacacatgataagtaagagg
atgttgtttccaaaggtgttcgatgctgctcaagtaagcgcagaagaatatgaagttatg
aaggatctcatcatccctcttggccgagtacctcagttctctgcacaaagtgggggttaa
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