KEGG   Vitis vinifera (wine grape): 100258101
Entry
100258101         CDS       T01084                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2
  KO
K14327  regulator of nonsense transcripts 2
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100258101
   03015 mRNA surveillance pathway
    100258101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100258101
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100258101
   mRNA cycle factors
    P-body specific factors
     100258101
SSDB
Motif
Pfam: MIF4G Upf2
Other DBs
NCBI-GeneID: 100258101
NCBI-ProteinID: XP_010658463
LinkDB
Position
13:join(4751269..4751331,4752263..4752350,4760000..4760202,4760526..4760870,4765534..4765638,4765788..4765915,4767938..4768111,4768258..4768339,4781115..4781408,4781518..4781715,4781814..4781915,4782386..4782637,4782725..4782943,4789213..4789383,4791231..4791416,4793711..4794184,4794597..4795094)
AA seq 1193 aa
MDHHEDDCRVGGDHHGKQDGEEAVARLEEFKKSMEAKMALRRTNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICDAKLKTSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFFPGKSGDELDLDRNLKAMKKRSTLKLLLELYFVGVVED
SGIFINIIKDLTSIEHLKDRDTTQTNLSLLASFARQGRIFLGFPLSGQEIHEEFFKGLNI
TADHKKIFRKAFHTYYDAAAELLQAEHTSLRQMEHENAKILNAKGELSDENVSSYEKLRK
SYDHLYRGVSSLAEALDMQPPVMPEDGHTTRVTSGEDVSSPAAKESSALEAVWDDEDTRA
FYECLPDLRAFVPAVLLGEAEPKVNEQSAKTQEQPTDLAPEADQSQSVNQDAAEISVDSC
SPREGRSNEKGKDKEEKEKEKSKDPDKEKGKERDADRKGENEKEKLKGLEGTNLDGLLQR
LPGCVSRDLIDQLTVDFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQLLEEEFNFLINKKDQMNIETKIRNIRFLGELCKFRIAPAGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEPYLLKCFMKVH
RGKYGQIHLIASLTSGLSRYHDDFAVSVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGE
LYNYEHVDSSVIFDTLYLILAFGHETAEQDVLDPPEDCFRIRMVITLLETCGHYFDRGSS
KRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMTRYLSIEEVSAALIELEEHE
RTYTTDKANSEKYSDTEKPSSRTTSNTSSANGQSPANGVEENGGAHEDVIGESDSDSGSG
TIDPEGHDEEEELDEENHDDGCDSEDDEDDGGGPASDEDDEVHVRQKVAEVDPQEEADFD
RELKALLQESLDSRKLELRARPTLNMMIPMNVFEGSTKDHHGRGVEGESGDEILDEEAGG
SKEVRVKVLVKRGNKQQTKQMFIPRDCSLVQSTKQKEAAELEEKQDIKRLILEYNDREEE
ELNGVGTQTMSWTPSGGSRVSRGSSWEGGRTSGARHRHHQNYSGGGFYYGRRK
NT seq 3582 nt   +upstreamnt  +downstreamnt
atggatcaccatgaggatgactgccgtgttggaggtgaccatcatggaaagcaagatggc
gaggaagccgttgctcgtctagaggaatttaagaaatcaatggaagcaaaaatggccctt
cgtcggactaatttgaaccctgaaaggcctgactctggtttcctgaggacattggactcc
agcattaagcgcaacacagcagttattaaaaaactcaagcagataaatgaagagcagcga
gaagggttgatggatgacttgcgaggtgtcaatctaagcaaatttgttagtgaagcagtg
actgctatttgtgatgccaagcttaaaacttcagatatacaagcagcagttcagatctgc
tctttgcttcatcaaaggtacaaagacttctcgccaagcctgattcaaggcctcttgaaa
gttttctttcctggaaaatccggggacgagttggacctggatagaaacttgaaagccatg
aagaagcgcagcactctgaaacttcttttggagctttactttgttggagttgtagaagat
agtggcattttcattaatatcattaaggatcttactagtatagaacacttgaaggaccgt
gatacaactcagacaaacttgtctcttctggctagttttgctcgacaagggagaattttc
ctaggctttccactgtctgggcaagaaattcatgaagagttttttaagggccttaacatc
acagcagatcataagaaaatcttcaggaaggcatttcatacttattatgatgctgctgct
gagctacttcaggctgagcatacgtcacttcgccaaatggagcatgaaaacgcaaaaatc
ctaaatgccaaaggggagcttagtgatgaaaatgtttcttcatatgagaagctgcggaag
tcttatgaccatttgtatcgtggtgtctcatccctagctgaagcacttgatatgcaacct
ccggtgatgccagaggatggtcacacaactagagtcacatctggagaagatgtctcttct
cctgctgcaaaagaatcttctgctcttgaagcagtgtgggatgatgaagatacaagggct
ttctatgaatgcttaccagatctcagagcatttgttcctgctgtactattgggagaagca
gagcccaaagtgaatgagcaatctgcaaagacacaagagcaaccaactgatctggcacct
gaagcagaccaaagtcaatcagtcaaccaagatgctgcagagatctctgtcgactcctgt
tctccgcgggaggggagaagcaatgagaaggggaaggataaagaagaaaaagagaaagaa
aagagcaaagatccagacaaagaaaaagggaaagaaagagatgctgacagaaaaggagaa
aatgaaaaggagaaactgaaaggtcttgaagggacgaatttggacggtctattgcagagg
ctcccgggttgcgtgagccgtgaccttattgatcaattgactgtagatttttgttattta
aattcaaagtcaaatcgaaaaaggctagttagggcattgtttaatgtccccagaacttct
ctagaactgctaccatactactcacgcatggtagccacactgtcaacatgtatgaaggat
gtctcttcaatgctcttacaattgttggaggaggagttcaacttcttgataaataagaag
gatcaaatgaacattgaaacaaagatcaggaatattagattccttggagaactctgcaag
tttagaattgcaccagctggccttgtttttagttgtttgaaggcttgtttagatgatttt
actcatcataacattgacgttgcttgcaatcttcttgagacatgtggccgttttctgtat
cgttctccggaaactactgtacgtatggctaacatgttggagatattgatgcgcttgaag
aatgtaaaaaatttggatcctcgtcacagcactcttgtagaaaatgcttattacttgtgc
aaacctcctgaaagatctgcacgagtttccaaagtccgtccaccactgcaccagtatatc
agaaaattgcttttctcggatcttgataagtcttccattgagcatgtgctgagacaactt
cgtaaattaccatggagtgaatgtgagccctaccttttgaaatgctttatgaaggttcat
aggggcaagtatggccagattcacttgattgcctctcttacttctggtctgagccgctat
catgatgactttgcagtttctgttgttgatgaggttctggaagagattagactggggcta
gagttgaatgactatgggatgcagcagcgacgcattgcccatatgagattcttgggagag
ctttataattatgaacacgtggattcatctgttatctttgatactctctatttgattctt
gcttttggccatgagacagcagagcaagatgtactggatccaccagaagattgtttccgc
attaggatggttattacccttcttgagacctgtgggcactactttgaccggggttcttct
aagaggaaacttgatagatttttaatacatttccagagatatattctcagcaaaggtgca
ctaccgctagatattgaatttgacttgcaggacttattcgcagatttacgtcccaacatg
acacgttacttatccattgaagaagttagtgcagctctaatagagcttgaggagcatgaa
cgtacatacacaactgacaaggccaacagtgagaagtattcagacactgaaaagccttca
agcaggactacttccaataccagctcagcgaatggacaaagccctgcaaatggtgttgag
gagaatggtggagcacatgaggatgtcataggtgagagtgacagcgactcagggagtggc
accattgacccagaaggacatgacgaagaagaggagttggatgaagagaatcatgatgat
ggatgcgacagcgaagatgatgaagacgatgggggtggacctgcatccgatgaggatgat
gaagtccatgtcagacagaaggtggcagaggtggaccctcaggaagaagccgattttgat
cgggagctcaaggctttattgcaggagagcttggattcacgcaagcttgagctgcgggcc
cggcctacactaaacatgatgataccaatgaatgtttttgaggggtcaaccaaggatcat
catggacggggggttgagggggaaagcggggatgagatattggatgaagaggctggggga
agcaaggaggtcagggtgaaagttcttgtaaagcgtgggaacaagcaacagacaaagcag
atgttcattcctcgggattgctcgcttgtgcagagcacaaaacagaaagaagcagctgag
cttgaagagaaacaagacattaagaggttgatcttggagtataatgatagggaagaagag
gagcttaatggggtgggaacccagacgatgagctggacgccaagtggaggtagtagagtt
tcccgaggtagctcatgggaaggggggagaacatctggagcacgtcatcggcatcatcag
aactattccggtggtggattttattatggcagaagaaagtga

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