KEGG   Vitis vinifera (wine grape): 100258243
Entry
100258243         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100258243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100258243
   03041 Spliceosome [BR:vvi03041]
    100258243
   03009 Ribosome biogenesis [BR:vvi03009]
    100258243
   03016 Transfer RNA biogenesis [BR:vvi03016]
    100258243
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100258243
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     100258243
Spliceosome [BR:vvi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    100258243
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    100258243
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    100258243
Transfer RNA biogenesis [BR:vvi03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    100258243
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 ResIII Helicase_C ATPase_2 nSTAND3
Other DBs
NCBI-GeneID: 100258243
NCBI-ProteinID: XP_002273102
LinkDB
Position
6:complement(join(16789275..16789553,16791506..16791770,16792643..16792875,16792955..16793104,16793555..16793709,16793800..16794079,16794165..16794288,16795355..16795605,16796091..16796201,16796524..16796628,16802001..16802339,16805404..16805622,16805719..16805919,16807862..16808134))
AA seq 994 aa
MGSLKRKSTEDPSVERLSPQKQQREDSASLNTLEESVACIHDVSYPEGYEPRSSFSSSPR
KDSKPAKEFPFTLDPFQSEAIKCLDAEESVMVSAHTSAGKTVVALYAIAMSLQNNQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEIIREVA
WVIFDEVHYMRDRERGVVWEESIVMAPRNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
YTDYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALVPAGEGDKKRENGKRQK
GLVVGRAGEESDIFKMVKMIIQRQYDPVILFSFSKRDCEFLAMQMARMDLNDDNEKVNIE
TIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEFIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQMRSEDGDPEKLLRNSFYQFQADRAIPDL
EKQAKNLEEERDSIIIEEEDSLENYYNLIQQYKSLKKDVRDIVFSPRYCLPFLQPGRLVC
IQCTKTEENSPSFCIKDQTTWAVIINFERVKGTEDDVSRKPEDADYMVDVLTRCTVSRDG
VLKKTIKIVSLKEPGEPVVVTVPISQIDGLSSVRLIISKDLLPLEARENTLKKVSEVLSR
FAKEGMPLLDPEEDMKVQSSQYRKAVRRIEALESLFDKHEVAKSPLIEQKLKVLHMKKEL
TAKIKSIKRTMRSSTALAFKDELKARKRVLRKLGYVTSDNVVELKGKVACEISSADELTL
TELMFNGVFKDIKVEDMVSLLSCFVWREKLQDAQKPKDELELLFTQLQDTARRVAKVQLE
SKVQIDVESFVNSFRPDIMEAVHAWAKGSKFYQIMEITQVFEGSLIRAIRRLEEVLQQLI
QAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq 2985 nt   +upstreamnt  +downstreamnt
atggggtcgctcaagagaaaatcaacagaagacccctccgtcgagcgcctctctccacag
aaacaacagcgagaagacagtgcttcactcaatacgttagaagaatctgtggcttgcata
cacgatgtttcgtacccagagggctacgagccacgttcttccttttcgtcttcgccccgg
aaagattcgaaacctgcaaaggagttcccgttcactctcgaccctttccagtccgaagca
atcaaatgcctcgacgccgaggaatctgttatggtatcagctcatacatcagcgggaaag
actgttgtagcgttatatgctattgccatgtcattgcaaaacaatcaacgagtaatatac
acttcgcctatcaaggcactcagcaaccaaaagtatagagaatttaaagaagaattctca
gatgttggtttgatgactggggatgtcactattgagcccaatgcttcttgcctggtaatg
accacagaaatctggagaagtatgcaatacaagggatcagaaattatacgggaggtggct
tgggtaatttttgatgaggtacattatatgcgtgatagggaaagaggtgtggtatgggaa
gaaagcattgtcatggctccaaggaactcacgatttgtattcctctcagcaactgtgcct
aatgcaaaggaattcgctgattgggttgcaaaggtccatcagcaaccgtgtcacattgtt
tatactgattatcggccaacaccacttcagcattatatttttccttctggaggcgatggt
ctctacttggtggtggatgaaaagggaaaatttcgtgaggatagctttcagaaagcttta
aatgcactcgttcctgctggtgaaggtgacaagaaaagagaaaatgggaagaggcagaaa
ggactggtggtgggcagagctggtgaagaaagtgacattttcaagatggtgaaaatgatt
attcagcgtcagtatgatcccgtgatacttttcagcttcagtaaaagggattgcgaattt
cttgcaatgcagatggcaagaatggatttaaatgatgacaatgagaaagtgaacatagaa
actatattctggagtgctatggacatgctttcagatgatgataaaaagttacctcaggtt
tcaaatatgctacccctcttaaaacgtggaataggcgtgcaccattctgggttgcttccc
atactgaaggaagtgattgagatactatttcaagaaggtctcattaagtgtttgtttgcc
acagagactttcagcattggtttgaacatgccagcaaagactgtagtgtttacaaatgtt
cgtaaatttgatggggataaatttagatggatatccagtggggagtttatacagatgagt
ggtcgtgctggtcgtcgaggcattgatgaacggggaatatgcatccttatggtggatgag
aagctagaaccttctactgctaaaatgatgctcaaaggaagtgctgattgcttgaacagt
gccttccatttaagttacaacatgcttctgaatcaaatgcgatctgaggatggtgatcct
gaaaagttgcttcgcaattcattctatcaatttcaagcagaccgtgccattcctgatctt
gagaaacaagcaaagaaccttgaagaagagagggattcaattataattgaggaagaagat
agtttggagaattattacaacctgatacagcagtataagagtttgaagaaggatgtccgt
gatattgtgttttctccaagatactgcttgcccttcttgcaacctggaaggcttgtgtgc
atccaatgcacaaagactgaggaaaattctccatctttctgtatcaaggaccagaccaca
tgggcagtgattatcaattttgaaagggtgaaaggtactgaagatgatgtaagtagaaaa
ccagaggatgcagactacatggtggatgttctaaccagatgtacagttagtagggatgga
gttttaaaaaagacaattaagattgtttcattgaaggagcctggagaacctgttgttgtt
actgttcctatttctcagattgatggtttaagtagtgtccgtctgatcatatcaaaggat
cttttgccattggaagctcgagaaaacaccctgaaaaaggtgtcggaagttctttctaga
tttgctaaagaagggatgcccctcctagatcctgaggaagacatgaaggttcaaagtagc
cagtacagaaaggctgtccgtaggatagaagctttagagagcttgtttgacaagcatgaa
gttgcaaaatctccacttattgagcagaagcttaaagttttgcatatgaagaaagaattg
acagccaagatcaagtcaattaagagaacaatgcgctcttccactgcattggctttcaaa
gatgaactcaaggcaaggaaacgggttcttcggaagctagggtatgtcacaagtgacaac
gttgtggagttgaaggggaaggttgcttgtgaaatcagtagtgcggatgagttgactctc
acggagcttatgttcaatggggttttcaaagacataaaggtggaggatatggtttctctt
ctgtcttgttttgtgtggcgggagaagcttcaagatgctcaaaagccaaaggatgaactt
gagttgctatttacacagttacaagatacagctaggagggttgccaaagttcagctggag
agcaaggtccaaattgatgtggagagctttgtgaattctttccggcctgatatcatggag
gctgtgcatgcttgggccaaagggtccaaattctatcagattatggaaatcacacaagtg
tttgaaggaagcttgatcagggctattaggagactggaggaagttctacagcaactcata
caagcagccaaatccattggagaaactgagcttgaagcaaaatttgaagaggctgtttcc
aagattaagagggacatagtctttgcagcatctctgtacttgtag

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