Vitis vinifera (wine grape): 100258377
Help
Entry
100258377 CDS
T01084
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100258377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100258377
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100258377
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100258377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Methyltransf_23
Motif
Other DBs
NCBI-GeneID:
100258377
NCBI-ProteinID:
XP_019073011
LinkDB
All DBs
Position
19:complement(join(8772957..8773818,8774297..8774567,8774650..8774776,8775142..8775252,8776911..8777239,8777842..8777972,8778471..8778844))
Genome browser
AA seq
734 aa
AA seq
DB search
MKQWPLLRSLSESLTRTLAAHSAYTLRFLSSATASPTFALKNVTKSNFESSLADLRRHVR
DADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSAEKFAVVQFGVCPFRWDSSRHC
FVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQFDFNACIYEGVSYLSREQENE
MLRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLFSERMKNRFNEWRKELLQDRKGGSQ
FLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLIQLVIKKHFKDLVYIRSSGDGSYSE
LIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTAVGFRHVIDLLSSEQKLIVGHNCLLDIA
HIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKILLNTNNVLKHLMKNGSTSLSKAFASLC
PQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCVFAQACSNLGI
DFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDIIDLGTGNRIAATTVCYNLKRRYPKILF
SNIVIVWGFPSQLSSKKIRECISKAFGPISVTTIYHLDETAVFVQFSKPELVADFLVLKE
TLETIQDPISVLHPLSVLLEGGNTCAASYETYKEICSSPISKVMFADQAKAVGIKWKTKL
IESKEKVKTQEDESFSKENGATDAASDPADKSKTRKIEDVIDNLSDDRISGSEIIDSLYA
AQTKLSKHIRTTNL
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatggcctctgcttcgttctctctccgaaagcctaacccgaaccctagctgcc
cattctgcttacactcttcgcttcctctcctccgccacagcctcaccaacctttgctctc
aagaacgttaccaagtccaacttcgagtcctccctcgccgacctccggcgccatgttcgc
gacgccgatttcgtggccattgacctcgagatgaccggcgtcaccagcgctccttggaga
gaatccttcgagtttgatcggtttgatgttcagtatctcaaggttaaggactcggcggag
aagttcgctgttgtccagttcggtgtttgtcccttccggtgggacagttctaggcattgc
ttcgtggctcatccgcacaatttttatgtttttcctcggcaagagcttccagttgatggc
ccttcatatgagttcctctgccagacaacgtcaattgacttcctagctaaataccagttt
gatttcaatgcctgtatatatgaaggagtatcttatttatccagagaacaagagaatgaa
atgctgagatgcctaaattccgaatgtgatgatgagatgtcactattgtggcgtaacatg
aaagaagttagagacacgccactggttagtgtggcagatgttctcttcagcgaaagaatg
aagaacaggttcaatgaatggcgcaaggagttattacaggatagaaagggagggtctcaa
tttctggagacctcaaatgacatgaagcaacaatttcaaactattttctttaagatgcga
ccagctcttatattgaatgggttcactgctcatcagctgagattgattcaattggtcata
aagaagcattttaaagatcttgtttacatccgttcaagtggcgatggttcctactcagaa
ctaatagtatatatagactctgacaatgacaagaacctacttatgaaagaggtgaaggat
gggcttcgcagagaagcagagatgaaaattaaaactgcggttgggttccggcatgtcatt
gaccttctttcctctgaacagaagttgattgttggccacaattgccttttagatattgca
cacatatacaacaaattctttggacctcttccattgactgctgaagattttgtctcctct
attcacaagtacttcccatacatgattgatacaaaaatactcttgaatacaaataatgta
cttaagcatctgatgaagaatggcagcacatcactatcgaaggcatttgcctcattgtgt
ccgcaaattgcttccagttccaaaaactcgggtttggctttccagccatgggttgaagtt
gaggtgcaagtggatgatatgaggtcctccaactggaactccggagccaagcatgaagct
ggctatgatgcttttatgactgggtgtgtctttgctcaggcatgcagtaatttaggaatt
gatttcaagaaacattcttcctcagcaaacttggcccacaataaaaatctccagaagcat
gtcaatcacctctacttcagctgggttaatggagacattattgatctcggtactggaaac
agaattgcggcaactacagtttgttataacctgaaaaggcggtacccaaagattttgttc
tctaatattgtcatagtatggggatttccttcccaactctcatcaaagaagataagagag
tgtatctctaaagcttttggtccaatttctgttactaccatctatcacttggatgaaact
gcagtttttgttcaattcagcaagccagagttggtggctgactttctggttttaaaagaa
accttagagacaattcaagatccaatctcagttttgcatcccctctcagtactgttggaa
ggtggaaacacttgtgctgccagctatgaaacttataaagagatttgtagctcacccatc
tccaaagtcatgtttgcagatcaggccaaggctgttggcattaaatggaaaaccaaatta
attgaatcaaaagaaaaggtgaagactcaagaagacgaaagtttcagcaaagaaaatgga
gccactgatgctgcttctgatcctgctgataaaagcaagaccaggaagatcgaagatgtg
atagataatctttcagatgaccgtatctcaggtagtgaaatcatagattctttgtatgct
gcccaaaccaagcttagcaagcatattagaactacaaatttatga
DBGET
integrated database retrieval system
