Vitis vinifera (wine grape): 100258926
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Entry
100258926 CDS
T01084
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03020
RNA polymerase
vvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100258926
09124 Replication and repair
03420 Nucleotide excision repair
100258926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100258926
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100258926
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100258926
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100258926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
100258926
NCBI-ProteinID:
XP_019074554
UniProt:
F6I5Z0
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All DBs
Position
3:complement(join(5961666..5961938,5964416..5964653,5964759..5965204))
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AA seq
318 aa
AA seq
DB search
MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV
TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD
DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagtatcctaccagcgtttcccaaaaatcaagatccgggaagtcaaggacgac
tacgccaagttcgagctccgtgagaccgatgccagcatggccaacgctctccgccgtgtc
atgatcgccgaagttcccaccgttgccattgaccttgtcgaaatcgaggttaactcctct
gttctcaatgacgagttcatcgcccaccgactcggactcattcctctcaccagtgagcga
gccatggccatgcgattctctcgcgactgtgacgcatgcgacggtgacggccagtgcgag
ttttgttccgtcgagttccatttgcgcgccaaatgcatgaccgacgaaacccttgatgtt
actagcaaggacctcatcagctccgaccatactgttgtccctgttgacttctccgattcc
tctggctacgattccgccgataagaagggaattataattgtgaagctgcggcgagggcaa
gaactgaggctgagagctattgccagaaaggggattgggaaggaccacgccaaatggtca
ccggcggctactgttacttttatgtacgagcctgagattcatatcaatgaagatttgatg
gaatctttgacgcttgaggagaaaacaagttgggttgagagcagtcccacaaaagttttc
gacattgatgctagttcccaacaggttgttgtggctgatgctgaggcatacacttatgat
gatgaagtgctcaagaaagcagaagctatggggaagccagggcttgtggagatctatgcc
aaagaagacagttttatattcacagttgaatctactggtgcaatcaaagcttctcagttg
gtgctcaatgcaatagatgttcttaaacaaaagcttgatgcagtgcggctatcagaggat
acggtagaagctgatgatcaatttggtgaactcggtgctcatatgcgaggaggatga
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