Vitis vinifera (wine grape): 100259037
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Entry
100259037 CDS
T01084
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100259037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100259037
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
100259037
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
100259037
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
100259037
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
100259037
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100259037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
Zeta_toxin
AAA_16
AAA
Viral_helicase1
nSTAND3
CPT
AAA_17
AAA_22
NPHP3_N
AAA_29
AAA_25
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
100259037
NCBI-ProteinID:
XP_010653326
UniProt:
F6GY72
A0ABY9CCT9
LinkDB
All DBs
Position
8:complement(join(9401535..9401870,9402655..9402825,9402915..9403587,9404379..9405331,9405948..9406069,9406170..9406203))
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AA seq
762 aa
AA seq
DB search
MAEMDCEPTSKEGEGQGKPIVVLLMGAPGSGKSTFCEHVIRSSTRPWVRVCQDTIGNGKA
GTKSQCLKSATSALEDGKSVFIDRCNLDREQRAEFVKLGSPQVEMHAVVLDLPAQLCISR
SVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFHRITFCQNDSDVQTALNTYSALSH
LDTLPPGCFGQKNPDAKIQLGIMKFLKKVEVPVNVGPDANFPKHPLSTQITKAKDSCCKQ
PEDISSSSGNAKEIKGGEDIVVHSVDGTVSSKDIPTLAFPSISTADFQFNHEKAADIILE
KVEEFVNKVENARLVLVDLSHGSKILSLVRAKAAQRNIDSNKFFTFVGDITRLYSKGGLR
CNAIANAANWRLKPGGGGANAAIFSAAGPELEVETKKRAGSLIPGKALVVPLPSTSPLFS
REGVTHVIHVLGPNMNRQRPNCLNNDYVKGSKVLREAYTSLFEGFASIMNTQGNLLEGSS
ENLRSELSVSQDHFKGNHIKNVPNHDQKIKRVGVYESETSKKCKGFQDEHEFDCTESKEG
KDKLNNEKIGRNMTKTWGSWAQSLYHIAMHPEKHKDNLIEISDDVVVLNDLYPKAQRHLL
VLARSEGLDCLADVGGEHLQLLRTMHAVGLKWAEKFLCEDELLVFRIGYHSAPSMRQLHL
HVISQDFNSKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSQLSMELRCHRC
RSAHPNMPRLKSHISNCQASFPPSLLQNDRLVLAPSKSGSEP
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaatggattgcgaacccacttctaaagaaggagaagggcaggggaagcccatt
gtggtattgctaatgggtgcaccaggtagtggcaagtccaccttctgcgaacatgtcatc
cgatcctccactcgaccctgggttcgagtctgtcaggacaccattggaaatggtaaagct
ggaacaaaatctcagtgcctaaagagtgcaacaagtgcattggaggatggcaaaagtgta
tttattgacagatgcaatctagacagggagcagcgggcagagtttgtgaagcttggcagt
ccccaagttgaaatgcatgctgtggtgcttgatcttcctgcccagctttgtatttctcgc
tctgtaaagcggactggacatgaaggaaatttgcaagggggaaaagctgctgcagtagtg
aacagaatgctacagaagaaagaattgcctaaattgagtgaagggttccaccgaatcaca
ttttgccaaaacgacagtgatgttcaaactgccctcaacacttatagtgcacttagtcat
cttgatactcttccacctggctgttttggccagaagaacccagatgccaaaatacagcta
ggtataatgaaattcctaaagaaagtagaggtccctgttaatgtaggacctgatgcaaat
ttccctaagcatcctctttctactcaaattactaaagcaaaggattcttgctgcaaacaa
ccagaagacatttcctcttcatctggcaatgctaaggaaataaagggtggtgaagacata
gtggtacactctgttgatggaactgtttcttcaaaagatattcccactttagcatttcca
tctatttcaacagcagatttccaatttaaccatgaaaaagcagctgatattattcttgag
aaggttgaggaatttgtgaataaggttgaaaatgccaggcttgttttggtagacttgtct
catggatcaaagattttgtctttggttagggctaaagctgcacagagaaatattgactca
aacaagttctttacatttgttggagatataactagactttattcaaaaggaggtctgcgc
tgcaatgcaatagctaatgctgccaactggagattgaaacctggaggtggaggtgcaaac
gctgcaatatttagtgctgcaggtccagaactagaggttgaaaccaagaagcgagccgga
tctcttatccctggaaaagctttggttgtccctcttccttcaacttcacccttgtttagc
agggaaggagtaacgcatgtcatacatgttcttggaccaaatatgaatcgacaaagacca
aactgtctcaacaatgactatgtcaaaggcagcaaagttcttcgtgaggcttacacatca
ctctttgaaggttttgcatctataatgaatacccaaggaaatttacttgagggaagcagt
gaaaaccttaggtcagagctatcagtatcacaagatcacttcaagggaaatcatataaaa
aatgttccaaatcacgatcagaagatcaagagagtgggggtttatgaatccgagacaagc
aaaaagtgcaagggatttcaggatgaacatgaatttgattgtactgaatccaaggaaggc
aaggacaagttgaacaatgaaaagattggtagaaacatgaccaagacctggggttcatgg
gctcaatctctttaccacattgctatgcatcctgagaagcataaagacaatttgatagag
atatcagatgatgttgttgtattgaatgacctctatccaaaggcacaaagacaccttctg
gttctggcccgatctgaaggtctcgattgtctggcagatgttggtggagaacaccttcag
ttattgaggacaatgcatgctgtgggtttaaagtgggctgagaagttcttatgtgaagat
gaattgttggtcttccgcattggataccattctgcaccatcaatgcgacaactgcatcta
catgttatcagccaggatttcaattccaaacatctgaagaataagaaacactggaactca
ttcaattctgctttctttcgtgattcagtagatgtaattgaagaaatcactaatcatgga
agagcaacaataaaaggtgaggacagccaattatcaatggagttacgttgccatcgttgt
agaagtgcccaccctaacatgccccggctgaaatcgcacatcagcaattgccaagcctcc
tttcctccatctctactccaaaatgaccgtcttgtacttgcacccagtaaatcaggcagt
gaaccctag
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