Vitis vinifera (wine grape): 100259455
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Entry
100259455 CDS
T01084
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vvi01009
]
100259455
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100259455
03041 Spliceosome [BR:
vvi03041
]
100259455
Protein phosphatases and associated proteins [BR:
vvi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100259455
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100259455
Spliceosome [BR:
vvi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100259455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
RRM_Nup35
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
100259455
NCBI-ProteinID:
XP_019080534
UniProt:
F6HUX2
LinkDB
All DBs
Position
14:complement(join(27472450..27472914,27473942..27474292,27478658..27479905,27480625..27481407))
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AA seq
948 aa
AA seq
DB search
MELKVSSPKPSGLSPSDGESDPEEKEISDEDDDDRNHKHRRRETRSQSLERDSLEQVLSR
PYRKRNKPFENGHSFRENDSQSSGSWKNYNISPMEKDFSGKFEKRRPGLATFARAPLDLN
QRTRMNQSFSGDSGPVRGRGRDPGSWNQRDPRFSQVDIASQMVQGSIPPGLYAGRGLPNV
SNTQNASWSGFGLLPGIPNGALDSLHSLGLQGTLRPPLSTSLNKSIPRQRCRDFEERGFC
LRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPSAHLLGTPAGPGPLPSVNAPPSTLMNS
KGFQNKSGKPEVAEDELGLNGAFSGSAVGGGAELYDPDQPLWNNDCPETPSALLALHSPK
IDETECLLDANSSDRYHARLCDGSDNGRPVKNTGTTVGSQSTNVSVWGRIGGAKDRLEAK
EKIDSVISSSDYLENEGKEDQEALTSVQGTSRQGKRIIVEDIGSKNVDLSSRTQSDAMRN
IRKPSQKALRTLFVNGIPQKNNRKEALLSHFRKFGEVIDIYIPLNSERAFVQFSKREEAE
AALQAPDAVMGNRFIKLWWANRDSVPDDSISGGNGASVIPHGVTAASVPSHPSAVNRAKD
NLQSAAPKVNAVHAIDAPSPTSDHSKPIVTNGPKAPPPLQKKLESLELMKEELRKKQEML
DQKRNDFRRQLDKLEKQATGLKGEVGAEQAAKRPKVGIVGDAAKAATPRCTDPGIAVGSP
QTEITMDKNKSAENVVPYSSKTNSAMVLLEPTVLKQSVRPLALGGTPSQMNRYKLDNRPM
GFRIMAPLPTGLANVGVLKEHFSSYGDLSTVELEDLEALDGGNGSDASRNCSARIIFTTR
RSAERAFVNGKCWQGHNLHFMWLISSNSGNELGGRESSPSASKGSSDADLQPAGKVACSV
SLETVLSGNGEPEDSERKSSMEHKEPDGNFQASPTLLCEEQSPKSNVC
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaggtttcatctccaaagcctagtggtctatctccatctgatggtgagagt
gatcctgaggagaaagaaatcagtgatgaggatgatgatgatcgtaatcataagcatcgt
aggagggagacacggtctcagtccctggagagagattctcttgaacaggttttatcaagg
ccttacaggaagcgtaacaaaccctttgaaaatggacattctttcagagaaaatgattct
cagtcaagtggatcatggaaaaactataacatttcccctatggagaaagacttttctggg
aagtttgagaaaaggcgtcccggtttagcaacatttgctcgggcaccattagatttgaat
caaagaacaaggatgaaccaatctttttctggtgattctggtcctgttaggggaagagga
agggaccctggttcttggaaccaacgtgatcctagattcagccaagttgatattgcttct
caaatggtgcaaggatccattcccccaggtctgtatgcaggaagggggttgcctaatgtt
tcaaacacacagaatgcttcttggagtgggtttgggctacttccaggaataccaaatggt
gctctggattccctccattcattgggtttgcaagggacactcagaccacctctcagtact
tctctgaataagagtattccacgccaacgatgtagggattttgaagaacgtggattttgt
ctaagaggagacatgtgcccaatggagcatggggtcaatcgaattgttgtggaagatgtt
cagagtctttcacagtttaacctccctgtttcacttccaagtgcacatcttctgggaaca
cctgctggaccagggcctttaccttctgttaatgcgcctccaagcacattgatgaatagc
aaaggatttcaaaacaaaagtggcaagcctgaagtggctgaggatgagttaggactgaat
ggtgcattttcaggttctgctgttggaggtggagctgagctgtatgatcctgatcagccc
ctttggaataacgattgtcctgaaacaccaagtgcactattagccctacattcgcccaag
attgatgaaactgagtgcttgttggatgctaattcttctgatcgttatcatgccagatta
tgtgacggctcagataatggacgcccagttaaaaacactgggactactgttggctcacag
agtacaaatgtttctgtttgggggagaattggtggtgcaaaagatcgattagaagcaaaa
gagaaaattgattctgtgataagttcctcagattatctcgaaaatgaaggtaaggaagat
caggaggcattaactagtgttcaaggcacttctcgtcaaggaaagcggattattgtagag
gacattggctcaaagaatgtggatttgtcctccaggacacaaagtgatgctatgcgtaat
attaggaagccatctcaaaaggcgctccgtactctatttgttaacggcattccacagaaa
aacaacagaaaagaggccctcctttcacattttcggaaatttggggaggttattgacatc
tatattccattgaatagtgaacgagcttttgtccagttctctaaacgggaagaggcagag
gctgctctacaggcaccggatgctgtaatgggtaaccgctttatcaagttatggtgggct
aatcgggatagcgtccctgatgacagcattagcggtggcaacggtgcatctgtaatcccc
catggtgtgacagctgcttcagttccatctcatccatctgctgtcaatagggcaaaagat
aatctccaatctgcagccccaaaagttaatgctgtccatgctattgatgctccttctccc
acatctgatcactctaaaccaattgttacaaatggtcccaaggctccacctcctttgcaa
aagaaactagagagtttagagcttatgaaggaggaacttcgcaagaagcaggaaatgctg
gatcaaaagcggaatgacttccggcgccagttggataagcttgagaaacaagccacagga
ctcaagggtgaagtaggagctgagcaagctgcaaagagacctaaagtgggaatagtaggt
gatgctgcaaaagctgcaactccaaggtgcactgatccgggtattgctgtgggatcgcca
caaactgaaataacgatggataagaacaagtctgctgagaatgttgtgccctatagttca
aaaacaaattcagctatggtgctgctggagcctactgtcttgaagcagtcagttcgtcca
ttagcacttggtgggactccttcccaaatgaatagatataaattggacaaccgtcctatg
ggatttaggattatggcacctttaccaacaggtcttgcaaacgtgggtgttttgaaggaa
cacttctcatcatatggtgatctttccactgtggaactagaagatctagaagccctcgat
ggtggtaatggttcagatgcatccagaaattgctcagctcgtataatcttcacaacacgt
cgttcagctgaaagggcatttgtaaatggtaaatgctggcaaggccacaatttgcacttt
atgtggttgatatcaagtaattctggcaatgagctcggtggccgagaaagttctccatct
gcttctaaggggtcttcagatgctgatcttcaacctgcaggaaaggtagcatgcagtgta
tctctggaaacagttctctcaggaaatggagaacctgaagattcagaaagaaaaagtagt
atggagcataaggaacctgatggaaattttcaggcaagtccgactctgttgtgtgaggaa
cagtcaccaaagagcaatgtttgttga
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