KEGG   Vitis vinifera (wine grape): 100259801
Entry
100259801         CDS       T01084                                 
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X2
  KO
K12600  superkiller protein 3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100259801
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100259801
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     100259801
SSDB
Motif
Pfam: TPR_1 TPR_11 TPR_2 TPR_17 TPR_16 TPR_14 TPR_8 TPR_CcmH_CycH TPR_6 TPR_19 TPR_12 TPR_9 TPR_7 ARM_TT21_C BTAD Y2_Tnp
Other DBs
NCBI-GeneID: 100259801
NCBI-ProteinID: XP_010664047
UniProt: A0ABY9DPX5
LinkDB
Position
18:complement(join(269309..269490,279848..280051,281630..282273,282628..282870,288751..288845,288963..289336,289976..290027,290161..290373,290524..290589,291268..291325,291422..291537,291764..291935,292021..292268,292480..292560,293056..293196,300000..300092,301877..301927,302064..302147,302262..302384,302471..302677,302772..302870,302948..302950))
AA seq 1182 aa
MEAQEEEGKNDHVLRKLQESVDSNPDDASLHFNLGVFLWEKEEQEWKEKAAEHFVRSAKL
NPQNGDAFRYLGHYYARVSVDTQRAFKCYQRSVTLNPNDSDSGEALCDLLDLGGKETLEI
AVCREASEKSPRAFWAFRRLGYLQLHQNKWSEAVQSLQHAIRGYPSCADLWEALGLAYQR
LGMFTAAIKSYGRVIELEDSRIFALVESGNIFLMLGSFRKGIEQFRQALEISPKSVSAHY
GLASGLLSLSKECTNLGAFRWGTSLLEEASKVAKSTTCLAGNVSCIWKLHGDIQLAYAKC
LPWLEENWNLEIDEEAFSNSILNWKRSCCLSAISANYSYQRALHLAPWQANIYTDIAISS
DLICSLKEDDKHNPNSWQLPEKMSLGGLLLEGDNNEFWVTLGFVSGHNALKQHAFIRGLQ
LDVSLAVAWACLGKLYRKEGEKQLARQAFDSARSIDPSLALPWAGMSADTHARDPTTDEA
YESCLRAVQILPVAEFQIGLAKLALLSGHLSSSQVFGAIQQAVQHAPYYPESHNLNGLVC
EARCDYQSAVASYRLARCAINTFSGSILKSHLRDISFNIARSLSKAGNALDAVQECEDLK
KEGLLDAQGLQIYAISLWQIGENDLALSVARDLAASVSAMEQASRATSVSFICKFLYKIS
GQESAIISILKMPKELFQNSKISFVVSAIDALDESNKLESVVSSSRYFLASHEEIARMHC
LVALGKLVKQGSEHCLGFENGVHHLRKALHMFPNSVLIRNLLGYLLLSSQEGEDAHSASR
CCIVDPSHSPNKEGSKSAFEILGAGAVACFASGMSNQKFSFPTCRYRCMSGPGAIQQLQK
WLHREPWNHNARYLLILNFLQKAREERFPRHLCTIIERLNFVAISNHLYLKKDTCCQYQK
FQLLLCASEISLQGGDHLGCVNHAENASTLLLPDCYLFFAHLQLCRAYVAKDDFKNLRKE
YIKCLELKTDYCIGWLCLKFMDPHHELQNDLSISELNFKECSKERKSSCNKWMALFDLLQ
GLISVQNQDFLCAEEFLAQACSLSDTESCIFLCHGVICMELARQQCDSQYLSHAIKSLMK
AQEISLIPLPFVPTLLAQAEASRGSKAKWEKNLCLEWFSWPPEVRPAELFLQMHLLARHS
KSGSESSSCVEPHQSQQRWVLRAIHLNPSCLRYWKVLQKLMQ
NT seq 3549 nt   +upstreamnt  +downstreamnt
atggaagcacaggaagaggaagggaaaaatgaccatgtcttaaggaagctacaagagtct
gtggattccaatcctgatgacgcctcccttcattttaatctcggggtcttcttgtgggaa
aaggaggaacaagagtggaaggaaaaagctgcggagcattttgtaagatcagccaaatta
aatccgcagaatggggacgcattcagatatttggggcattattacgcaagggtatccgtt
gatactcagagagctttcaagtgttaccagagatcggtcacccttaatcccaatgattcc
gattctggggaagcgttgtgtgatttgttggacctaggaggaaaggagactttagagatt
gcggtctgcagggaagcatcagagaagtcccctagggctttttgggcttttcgaagattg
ggttacctgcagctccatcaaaataaatggtctgaagcagtacagagtcttcaacatgcc
attcgagggtatcctagctgtgctgatttgtgggaagctctggggcttgcctaccagcga
ttgggtatgtttactgcagctataaagtcatatgggagagtcattgaattggaggattcc
agaatcttcgcattggttgagagtggaaacatctttttgatgcttggttcctttagaaag
ggtatcgagcaatttcggcaagctttggagatctcacctaaaagtgtatctgcacactat
ggtcttgcttctgggctgcttagtttgtcaaaggaatgtaccaatttgggtgcttttaga
tggggaacttcacttttagaggaagcatctaaagttgcaaaatcaactacctgtttggct
ggaaatgtttcatgtatttggaaattgcatggggatattcagcttgcatatgcaaaatgt
ttaccgtggttggaggaaaactggaacctagagattgatgaggaagctttcagtaactcc
attcttaattggaagcgatcctgctgtttgtctgcgatatctgccaattattcttaccag
agggctttgcacttagccccatggcaagctaatatctatactgacattgcaataagttca
gatctcatttgctctttgaaggaggatgataaacataacccaaattcttggcagctacct
gaaaaaatgtctttgggaggcttgttacttgagggtgacaataatgagttctgggtgaca
ttgggatttgtatctggtcataatgcactgaagcaacatgcttttatcaggggactgcag
ttagatgtatctttagctgttgcatgggcatgccttgggaagctttatagaaaagagggc
gagaagcaattggcaaggcaggcatttgattctgctagaagtatagatccttcacttgca
ttaccatgggcaggcatgtcagctgatacacatgccagggatcccacaacagatgaggct
tatgagagttgtttacgtgctgtgcagatattgcccgttgcagagtttcaaattggcctt
gcaaagcttgctcttctttcaggtcacctttcatcctcacaggtctttggagccatccaa
caggctgtgcagcatgcaccttactatccagaatcccataatttgaatggactggtttgt
gaggcacggtgtgattatcagtctgctgttgcttcttataggctagcacgctgcgcaatc
aacaccttttcaggctccatattgaaatcccatttgagagacatatcatttaatattgca
agatcactcagtaaagcagggaatgcccttgatgctgttcaagaatgtgaagatttgaag
aaagaaggtctgcttgatgcacaaggtttgcaaatatatgctatctccttatggcaaatt
ggtgaaaatgaccttgccctgtctgtggcaagggatctagctgcaagtgtttctgccatg
gaacaggcttctagggccacttctgttagtttcatatgtaaatttctgtataaaatatct
gggcaggaatcagcaataataagcattttgaaaatgccgaaagaactatttcagaattca
aagattagttttgttgtgtccgccattgacgctcttgatgaaagtaataagctggaatca
gttgtttcaagcagtcgatactttcttgcatctcatgaagagatcgctagaatgcactgt
ttagtagcacttggtaaactggtcaaacaaggatcagagcactgccttggatttgaaaat
ggggttcatcaccttagaaaagctcttcacatgttccctaacagtgttttgataaggaat
cttcttggttatcttttactatcctctcaagaaggggaagatgctcatagtgctagtagg
tgctgtattgtagacccctcccactctcccaataaagaaggttcaaagtcagcatttgag
atccttggtgctggagcagttgcttgctttgccagtggcatgagcaaccagaaattctct
ttcccaacatgcagataccggtgcatgagtggaccaggagcaatacaacagctgcagaag
tggttgcatagagaaccttggaaccataatgcacgttacttgttgatacttaattttcta
cagaaggcacgtgaagagagatttccaagacatctttgtacaataattgagcggctaaat
tttgtggctatttccaaccacttatatttaaagaaggatacatgttgtcaataccaaaag
ttccagctgctactttgtgcttctgaaatcagtttgcaaggtggtgatcatcttggctgt
gtcaaccatgctgaaaatgcttcaacactcttgcttcctgattgctacctcttttttgcg
catttgcaactatgccgtgcttatgttgcaaaagatgattttaaaaatctacggaaagag
tatataaaatgcttggagcttaaaacagattattgtatcggttggctatgtcttaaattc
atggatcctcaccatgaactacaaaatgatttgagcatctcagagttgaacttcaaggag
tgctcaaaggagagaaagagttcatgtaacaagtggatggctttatttgatttgctgcag
ggtctgatttctgttcagaatcaagattttctctgcgcagaagaatttcttgcgcaagct
tgttcgttgtcagatactgagagctgcatcttcctatgtcatggtgtcatttgtatggag
cttgccaggcagcagtgtgattcccagtatttgtcacatgctataaagagtctcatgaaa
gcccaagagatttctctgattcccttaccttttgtcccaacattgctagctcaagcagag
gcaagcagaggctctaaagcaaagtgggagaaaaatctctgtcttgaatggttttcttgg
ccaccagaggtgaggcctgctgaactctttcttcaaatgcatttgcttgcaagacactcc
aaatccgggtctgagtcatcctcctgtgtggagccccatcagagccaacagaggtgggtt
ctccgggcaatccatttgaacccttcttgtttgagatattggaaggttttgcagaagtta
atgcagtga

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