Vitis vinifera (wine grape): 100259985
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Entry
100259985 CDS
T01084
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100259985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100259985
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100259985
mRNA degradation factors
5'-3' decay
Decapping complex
100259985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
100259985
NCBI-ProteinID:
XP_002269575
UniProt:
F6I592
LinkDB
All DBs
Position
19:complement(join(9715127..9715435,9716421..9716546,9716705..9716869,9717174..9717344,9718362..9718481,9718559..9718918,9720212..9721813,9722130..9722258,9726197..9726415,9726556..9726712,9726790..9726839,9728090..9728887))
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AA seq
1401 aa
AA seq
DB search
MASPGNPNQAAAFDMHKLFKPTSPSPQNPNNLNSSSPFPPSSYPPPPSASYPPPSGPYSY
PPQTSPFHHQHHYHIPYPQEQLSNMHHQRSVSYPTPLLQPPPHHLAPPNPNPGARLMALL
SPPTTNLDLTQQPAMPVAPIQQPASGVSEFAASPNVPILPSAPPPGIPNPAVVTASPVRM
PSSKLPKGRRLVGENVVYDVDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNKTYIC
YGLKLGAIRVLNINTALRYLLRGHAQRVTDMAFFAEDVHLLASASINGRVYVWKISEGPD
EEDKPQITGKIVIAIQIVGEGESVNPRVCWHCHKQEVLVVGIGKRILKIDTTKVGKGESY
SADEPLNCPVDKLIDGVQFIGKHDGEVTDLSMCQWMTTRLVSASTDGTIKIWEDRKTLPL
LVLRPHDGHPVNSATFLTAPHRPDHIILITAGPLNREVKLWATESEEGWLLPSDAESWHC
TQTLDLKSSAEPCVEEAFFNQVLALSKSGLLLLANAKKNAIYAVHLEYGSNPAATCMDYI
AEFTVTMPILSFTGTSELLHGEHVVQVYCFQTQAIQQYALNLSQCLPLLPENVGVEKSDS
GVSHDVTNAEGFGTLEPPGSKLTEMPLTSSALKSTVLISSSESEPGVRFPVSSASIESAT
LSPESKPGALPLVNNDNDIVSIPSPPLPLSPRLSGKLSGFRSPTNNFEPGPTLGDRGDSD
QVVIDYSVDRQIDTVCTTLSDLPSLDDDSRNDENKVAQDDSSTILNPTVMFKHPTHLITP
SEIFMAVSSAEATHSTESKSEGEANIQDVSINSDVSNVEVEVKVVGETGSTQNDEFGLQG
ESQNLALENKEKAFCSQASDLGIEMAKECSALSSETYVVEESRQVDGARMEALARPSNAG
EDEVIDAIKDVSGKVADSAMPTTVPQSPAPTTKGKKHKGKNSQVSPSPTAFNSTDSSNEP
GANLSSPSVEAAVPHILAMQETLNQLLSMQKEMQKQISVLVAVPVTKEGRRLEATLGRSM
EKSVKANADALWANILEENAKHEKLVRDRTQQITSLITNSLNKDLPAILEKTVKKEMAAV
VPAVARTITPVVEKTISSAITETFQRGVGDKALNQVEKSINSKLEATVARQIQVQFQTSG
KQALQDALKSNLEASVVPAFEMSCKAMFDQVDSTFQKGMVEHATTVQQQFESTHSPLALA
LRDAINSASSMTQTLSGELADGQRKLLALAAAGANPTSVNPLVTQLSNGPLGGLHDKVEM
PLDPTKELSRLISERKYEEAFNGALQRSDVSIVSWLCSQVDLQGILSMVPLPLSQGVLLS
LLQQLACDINKDTPRKLGWMTDVAVVINPGDPMIAMHVRPIFDQVYQILNHHRSLPTTTS
SQGQSIRLLMHVINSMLMTCK
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccctggaaatccaaaccaagcggcagcgtttgatatgcacaaactcttcaaa
cccacaagccctagccctcaaaaccctaacaatctcaattcttcttctccatttccaccc
tcctcttatcctccaccgccttctgcctcttaccctccgccctctggcccttattcctac
cctcctcaaacctccccatttcaccatcaacatcactaccatatcccctaccctcaagag
caactctctaacatgcaccaccagcgctcagtttcttatcctactcctcttcttcaacct
ccgcctcaccaccttgctcctccaaaccctaaccccggtgctcgattgatggcgctcctc
agccctccgaccaccaatcttgatttgacgcagcagcccgccatgccggtggctccaatt
cagcagccagcttctggggtttccgaatttgcggcctctcccaatgttccgatcctgcct
tctgcccctccgccagggataccgaatcctgctgttgtcactgccagccctgtgcggatg
cctagcagtaagttgcccaaagggcggagattggtgggtgagaatgtggtgtatgatgtg
gatgttaggctgcaaggcgaggtgcagcctcagcttgaggtcactccgatcaccaagtat
gtttccgatcctggcctcgttttaggacgacagattgctgtcaataaaacctatatatgc
tacgggttgaaattgggggcgattcgggtgcttaatataaacaccgcactgagatatttg
ctcagaggtcatgctcagagggtgactgacatggctttctttgctgaggatgttcatctt
ttagctagtgcaagcatcaatggacgtgtttatgtatggaagatttctgaaggtccagat
gaggaagataagccacaaattacaggaaagattgtgattgccattcaaatagtaggagag
ggggaatctgtaaatccaagagtttgctggcactgtcacaaacaagaagttttggttgtt
gggattggaaaacgtattctgaagattgacactacgaaagttggaaagggtgaatcttat
tctgcagatgaacctctcaactgtccagtagacaagcttattgatggggtccaatttatt
gggaaacatgatggagaagtgactgatctgtcgatgtgccaatggatgaccactcgttta
gtttctgcttcaacggatggcacgataaagatctgggaagaccgcaagacacttcctctt
ctggtactgaggccacatgatggccatcctgtcaattcggctacattcctgactgctcct
caccgcccggatcacattattctcataactgcgggcccactgaatagggaagtgaagcta
tgggccacagaaagtgaagaaggctggctgctgcctagtgatgcagaatcatggcattgt
actcagacgttggacttgaagagttcagctgaaccttgtgttgaggaggcgttctttaat
caagtgttagcattgtctaaatctggccttctcttacttgcaaatgccaaaaagaatgct
atatatgctgtacatttggagtatggttctaatcctgcagcaacctgcatggactatata
gcagagtttactgtcactatgcctattttaagttttactgggacaagtgaattattacat
ggtgaacatgttgttcaggtatattgtttccagacacaagctattcagcagtatgctttg
aacttatcccagtgtttgccactgttgccggaaaatgtaggggtagagaagtctgactct
ggtgtttcacatgatgtgactaatgcagaaggttttggcaccttagagcctcctggaagt
aaacttactgagatgcctttaactagttctgcactcaaatcaactgtgctaataagtagc
tctgagagtgaacctggtgtgagatttcctgtgagctctgcttctattgagtctgccact
ttgagtccagaatctaaacctggtgctttacctttggtcaataatgacaatgatattgtt
tcaattccatcaccacctcttcctttgagtccaaggctgtcaggaaagttgtctggtttt
agaagtccaacaaataactttgaaccaggtcccacccttggcgatcgtggcgatagtgac
caagtagttattgattattcagttgacaggcaaatagatactgtttgtacaaccctctct
gatttgccttctttagatgatgattcaaggaatgatgaaaacaaagttgcacaagatgac
agttctaccattctaaatcctactgtcatgttcaaacatccaacacatctgattactcct
tctgagatattcatggccgtttcatctgctgaagctacccatagcactgagagtaagagt
gagggagaggccaatattcaagatgtctctatcaacagtgatgtgagcaatgttgaggtg
gaggttaaagttgtgggtgaaacaggatcaactcagaatgatgaatttggcttgcaagga
gaatctcagaatcttgctttagaaaataaggagaaagccttttgctcccaggcttcagat
cttggaattgagatggccaaagagtgcagtgcattatcatctgaaacttatgttgtggag
gaatctcggcaagttgatggtgctagaatggaggcattggcccggccttcaaatgcaggt
gaggatgaagtgattgatgctataaaagatgtgtctggaaaagtagctgattccgccatg
cctacaacagttcctcaatcaccagcaccaactacaaaagggaaaaagcataaggggaaa
aactctcaagtatccccatctccaactgctttcaattctaccgattcttccaatgagcca
ggtgcaaatttgagtagcccttcagtggaagctgctgttccccatattctggctatgcag
gagacacttaatcagcttttgtccatgcaaaaagaaatgcagaagcagatatcagtatta
gttgctgtcccagttaccaaagaaggtagaagattagaggctactctaggacggagtatg
gagaaatctgtcaaggccaatgctgatgctttgtgggctaatatcctagaagagaatgcg
aaacatgagaagttagtacgagatcgtacacagcagataacaagtttgattactaatagt
ttgaacaaggacttgccagccatattggagaaaacagtgaaaaaggaaatggctgcagtt
gtaccagctgtagctcgcacaattacgcctgttgttgagaaaacaatttcctcggctatc
acagagaccttccagagaggagttggtgataaggcattgaatcaagtggagaaatcaatt
aattcaaaacttgaagccactgttgctaggcaaattcaagtacagtttcaaacttctggc
aaacaagctcttcaggatgcattaaaatccaatctggaagcttcagtggtcccagcgttt
gagatgtcatgcaaagcaatgtttgaccaagttgactctacatttcaaaaaggaatggtt
gagcatgccactacagttcagcagcaatttgaatccacccattctcctttagcacttgct
ttaagggatgccattaattcagcatcatcaatgactcaaactttaagtggagaattggct
gatggtcaacgaaagctcttagctcttgcagctgcaggggcaaaccctacatcagtgaat
cccctggttactcaactgagtaatggacctttgggtggtctccatgacaaggttgagatg
cctttggatccaacaaaggagctatctagattgatatctgaacgcaaatatgaagaggct
ttcaatggagccctacaacgaagtgatgtctctatcgtgtcatggttgtgttctcaggtt
gatctgcaagggattttgtcaatggttcctctcccattgagccaaggagtactgctctcc
cttctgcagcagttggcctgtgacatcaacaaggatacaccccgaaaattgggatggatg
acagatgtggcagtagtcataaacccaggagaccccatgatcgcaatgcatgtgcggccc
atcttcgatcaggtctatcagatactaaaccatcatcgatccctacccaccacaaccagt
tcccaaggtcaaagcatccgccttcttatgcatgtcatcaactccatgctgatgacctgt
aaatga
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integrated database retrieval system
