KEGG   Vitis vinifera (wine grape): 100260012
Entry
100260012         CDS       T01084                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X2
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vvi03036]
    100260012
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100260012
Chromosome and associated proteins [BR:vvi03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    100260012
DNA repair and recombination proteins [BR:vvi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     100260012
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ HEAT
Other DBs
NCBI-GeneID: 100260012
NCBI-ProteinID: XP_059595465
LinkDB
Position
9:join(3130605..3130676,3131030..3131092,3131429..3131483,3132013..3132110,3138730..3138888,3139035..3139094,3139900..3140088,3140734..3140787,3142840..3142926,3143074..3143794,3144743..3145122,3145447..3145520,3146308..3146413,3146606..3147510,3147631..3147706,3147784..3147895,3149967..3150043,3151089..3151169,3151432..3151511,3152311..3152326)
AA seq 1154 aa
MAQLSQLTQYIESYVDSSRSSTQQAASVDAIAYLLKNDILTLETLVTEMGMYLTTTDNII
RTRGILLLAELLTRLASKPLDNVTIHSLISFFTDRLADWRALRGALIGCLALMKRKSNMG
RVTDNDARAVAQAYLENVQVQSLGQHDRKLCFEILECLLDHYPESVASLGDDLVYGICGA
IDGEKDPRCLMLTFHIVEILARLFPDPSGPLASFAGDLFDILGCYFPIHFTHPQGEDVDV
KRDDLSRALMLAFSSTTLFEPFAIPLLLEKLSSSLPLAKVDSLKYLSNCLLKYGDDRMTK
HVEAIWFSVKDAIFCSEQEPMLSLASELLDHVGFQENEIVTEAIILLQKVILENSGLSLS
LIVGDKDINTIVNTVTSFRSYNDIPLQSKHKLCAIGRILYVSAKASITCCNRVFESFFFR
LMDTLGLSVRNSSGDCLPNFDYVFSERLNFGALYLCIELLAACRDLVVGSEELTSKSVSA
QESWCCMLHSFSSLLMKAFSSVLDASTDKDAYEADIYSGVKGLQILATFPGEFLPISKSI
FENVLLTFISIIVEDFNKTLLWKLALKALVQIGSFIDRFHESEKALSYNYIVVEKIVSLM
FLDDFGLPFQLRLEAISDIGTTGLNVMLKIVQGLEDAIFANLSEVYVHGNLKSAKIAVQL
LECYSNKLLPGIHGAGDFEDVLSRFAVNIWNQIENSMAFSVGAQENELLNATMTAMKLAV
GSCSEGSQGKIIKKAYSVLSSCPSFTLMESMPITGTVQLEGLQHTQDLECFSCRDKWVIS
LFASAIIAVRPQTHIPNIRVVLHLFMTNLLKGHVPAAQALGSMVNKLCPKSNGVEISSTC
TLEDALDIIFNTSLWDSHNHGPLKRCSGIGVDNEMGLANLCLSASNCQLLQVCAIEGLAW
IGKGLLLRGHEKVKDITMIFLRCLLSSGGIDNLPLNQGSLENNQEQDVLPSVAKSAADAF
HVLMSDSEICLNKRFHANIRPLYKQRFFSSVLPILVSSMAESRLSNTRSMLYRALAHIIS
DTPLIAVLSEAKKIIPILLDSLSILSTYNLDKDILYNLLLVLSGILMDKNGQETVVENAH
VIINCLIGLVGYPHMMVVRETAIQCLVAMSRLPHARIYPMRTQVLRSVQKALDDPKRAVR
HEAVRCRQAWDHKV
NT seq 3465 nt   +upstreamnt  +downstreamnt
atggcacaactgagtcaattgactcaatacattgaatcgtacgtcgactcatctcgctct
tcgactcagcaggctgcaagcgtggacgctattgcttaccttttgaagaatgatatatta
actttagagacacttgtcacagagatggggatgtatttgaccactacagataacataatc
cgtacaagaggtatccttcttcttgcggaattgcttacacgtcttgcatcaaagccactt
gacaatgttaccatacatagcttgataagcttcttcacagatagactggcagattggaga
gctttgcgaggtgcactcattggttgcttggcattgatgaagaggaaaagtaatatgggt
agggtcactgacaatgatgcaagagcagttgcccaggcatacttagagaatgtacaggtg
caatctttaggacagcatgacaggaagctctgctttgagattttggaatgcctattagat
cactaccccgaatcagttgcttcactgggtgatgatcttgtttatgggatctgtggagct
atcgatggagaaaaggatcctcgttgcttaatgctcacatttcatatcgtggagattctt
gcacgactatttccagatccatctggtccactagctagttttgctggggatctttttgac
attttgggctgttacttccctatacatttcacacacccccaaggtgaagatgttgatgtg
aaaagagatgacctctctagggcattaatgctagcattttcttctacaactctctttgag
ccgtttgccataccattgcttcttgagaaactttcttcttctctgccattagcaaaggtt
gattctttgaagtatctcagcaattgcttgttgaaatatggagatgacagaatgacaaag
catgttgaagctatttggttttcagtaaaagatgcaatcttttgttcagagcaagaaccc
atgttatccttggcttcagaattactagatcatgtgggctttcaggagaacgaaattgtg
acagaggctatcatacttctgcagaaggttattttggaaaatagtggtttgtcattaagt
ttgattgttggtgataaagatataaacacgatagtcaacacagtcactagttttagaagt
tacaatgatattcctctgcaaagcaagcacaaactatgtgcaattggtcgtatcctctat
gtttctgccaaggcctctatcacctgctgcaatcgagtgtttgaaagctttttcttccgc
ttgatggatactctggggctttcagtgagaaattcatctggggattgccttccaaatttt
gattatgtctttagtgaaagacttaattttggagccctttatctctgcattgagctcctt
gctgcatgcagagatttggtggttggctctgaagaactcacatcaaaatctgtttcagca
caagaatcatggtgctgcatgcttcatagcttttcgagtttattaatgaaggccttcagt
tctgtattggatgcaagcacagacaaagatgcttatgaggcagatatttactctggagtg
aaaggtttgcagattctggctactttcccaggggaatttttaccaatatcaaaatccata
tttgagaatgttttgttgacatttatatcaattatcgttgaggatttcaacaaaacattg
ttatggaaactagcattgaaggcattggtgcaaattggctcattcattgatagatttcat
gaatctgagaaggcactgagttataactacattgttgttgagaagattgtttcattgatg
tttctcgatgattttggcctgccttttcaactcagactggaagcaatttctgatattggc
actactggtctgaatgttatgctgaaaattgttcaagggttggaagatgctatatttgct
aatttatcggaggtttatgtccatggaaatctgaagtcagccaaaatcgcagttcagctt
ttggaatgttactctaataagctgcttccagggatccatggagctggagattttgaggat
gttctttcacgttttgctgttaatatttggaaccaaattgaaaatagcatggcttttagt
gttggggctcaggaaaatgagcttcttaatgcaacaatgacagcaatgaagcttgctgtt
gggagttgttcagagggaagtcagggtaaaatcattaaaaaagcttacagtgtactttca
tcatgcccttcttttacattgatggaatccatgccaatcaccggtacagtccagttggaa
gggttgcaacatactcaagatttagaatgtttttcttgtagagataaatgggttatttca
ttatttgcatcagcaattatagcagttcgtcctcaaacccacattccaaatataagagta
gtgctgcatttattcatgacgaaccttcttaagggccatgttccagcagctcaggcattg
ggttctatggttaacaaactgtgtccaaaatccaatggagttgagatttcaagtacttgt
actttggaagatgcactggatataattttcaacacaagtttatgggattcccataaccat
ggtcccttaaagagatgcagtggaataggagtggacaatgagatgggtcttgctaattta
tgccttagtgcttcaaactgtcaattgcttcaagtttgtgctattgaaggattagcatgg
atagggaaaggtttgcttttgcggggtcatgaaaaagttaaagatataacaatgattttt
ttgaggtgcttgctgtcaagtggtggaatagataacttgccattgaaccagggttcatta
gaaaacaatcaggagcaggatgtgcttccttcagtggcgaaatctgccgcagatgcattt
catgttcttatgagtgattctgaaatttgtttgaataagagatttcatgcaaacatacgg
ccgctctataagcaacgctttttctcttcagtactgcccattctggtatcttcaatggcg
gaatctcgtttgtctaacacaagatctatgctatatcgagctttagcacacattatttct
gatactccactcattgctgtattatctgaagccaagaagatcattccaatattattggat
agcttatccatattgagtacttataatctggataaagatattctctacaatctcttgcta
gtcttatctgggatattgatggataaaaatggacaagaaactgtggtcgagaatgcgcat
gtcatcattaattgccttattgggcttgttggctacccccatatgatggttgttcgagag
acagcaattcagtgtcttgttgccatgtccagattgccccatgctaggatttatcccatg
agaacacaggttttacgttctgtacaaaaagctcttgatgatccaaagagagctgtacgt
cacgaagctgttagatgtcgacaagcatgggaccacaaagtgtga

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