Vitis vinifera (wine grape): 100260069
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Entry
100260069 CDS
T01084
Name
(RefSeq) oligouridylate-binding protein 1B isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
vvi
Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100260069
03041 Spliceosome [BR:
vvi03041
]
100260069
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100260069
Spliceosome [BR:
vvi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100260069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_occluded
RRM_5
RRM_DEAH11
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
100260069
NCBI-ProteinID:
XP_002270823
UniProt:
F6HXU4
LinkDB
All DBs
Position
9:complement(join(654410..654688,655688..655864,655976..656061,656635..656754,657097..657127,657220..657295,657517..657604,657721..657782,657857..657933,658100..658202,658574..658635,660400..660501))
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AA seq
420 aa
AA seq
DB search
MQHQRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDSSTCRSVYVGNI
HTQVSEPLLQEVFASTGPVEGCKLVRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPI
KVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRG
FGFVSFRNQQDAQSAINDITGKWLGSRQIRCNWATKGAGSNDDKQSSDAKSVVELTNGSS
EDGKETATNEAPDNNPQYTTVYVGNLAPEVTQLDLHRHFHTFGAGVIEEVRVQRDKGFGF
VRYNTHAEAALAIQMGNTQSILCGKPIKCSWGSKPTPPGTSSNPLPPPAAAPLPGLSATD
LLAYERQLAMSKMGHALMHPQGQHPLKQAAMGMGAAGASQAIYDGGFQNVAAAQQLMYYQ
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcagcatcagaggctgaaacagcaacagcaagccttgatgcagcaagctcttcttcag
cagcagtcgctctaccaccccggcctcttggctcctcctcagatagagccaataccaagt
ggaaatctgcctcctggttttgattcaagtacatgccgcagtgtgtatgttgggaacatt
catacgcaggtatcggaaccacttcttcaagaggtttttgcaagtactggtcctgttgaa
ggctgcaagctcgttagaaaggaaaagtcatcctatggattcatccactactttgatcgc
agatctgctgcattggctatattgtctctaaacggaaggcatctgtttgggcagcctatc
aaagttaattgggcatatgctagtggtcaaagggaggacacatcaggtcacttcaacatt
tttgttggtgatctcagccctgaggttactgatgctacattgtttgcatgcttttctgtt
tttcccagttgttcagatgcgagggttatgtgggatcagaagactgggcgttcaagaggg
tttggatttgtttctttccgcaatcaacaggacgcccaaagtgctatcaatgacataacc
ggaaagtggcttgggagtcgacagatacgttgtaactgggcaactaaaggtgctggttcc
aatgatgataaacaaagttcagatgccaagagtgtggtagagctgaccaatggttcatca
gaagatggtaaagagacagcaactaatgaggctcctgacaacaaccctcagtatacaact
gtttatgtgggcaatcttgctccagaggtgacacagcttgatctccatcgtcactttcat
acttttggtgctggggtaattgaggaagttcgggttcaacgagataagggctttggtttt
gttagatacaatactcatgctgaggctgctctggctattcagatgggaaatacccagtca
attctgtgtggcaaaccaatcaagtgctcatggggtagcaagccaactccaccaggaaca
agttcaaacccactccccccacctgcagctgcacctctgccaggtctttcagccacggac
ctcctagcttatgagcggcaactagcaatgagcaagatgggccatgcactgatgcaccct
caggggcagcatcctcttaagcaggcagcaatgggaatgggggccgctggagcaagccag
gcaatatatgatggcggcttccagaacgttgctgctgctcagcagctcatgtattaccag
taa
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