KEGG   Vitis vinifera (wine grape): 100260829
Entry
100260829         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100260829
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100260829
   03012 Translation factors [BR:vvi03012]
    100260829
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100260829
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100260829
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    100260829
SSDB
Motif
Pfam: OB_NTP_bind R3H Helicase_C DEAD HA2_C AAA_22 HA2_N nSTAND3 Ank_2 ATPase Ank_5 AAA_19 AAA_25 ABC_tran AAA_23 PhoH Rad17 NACHT AAA_7
Other DBs
NCBI-GeneID: 100260829
NCBI-ProteinID: XP_002278608
UniProt: F6H574
LinkDB
Position
12:complement(join(1544996..1545451,1545582..1546685,1546950..1547954,1548047..1548136,1548283..1548316,1551051..1551103,1555064..1555225,1555429..1555487,1555607..1555697,1560240..1560284,1560629..1560703,1560861..1561170,1561377..1561467,1569745..1569865))
AA seq 1231 aa
MTRSGKKRQKDGEQNNPGVAEGTRIRISRALQEFRETHNEVYTFEANLTNHERAVVHEVC
RKMGMTSKSSGRGSQRRVSVYKTKKKVDTKKEEGNPYLNFSEEAKEVLLDLFTRYPPDDK
EMVTQMVENGSGKTEKIWGKKDDIFGRPSMNKAEIAKKVELLASRIEEDPHLRQITEGRS
KLPIASFKDVITSTIESHQVVLISGETGCGKTTQVPQFVLDYMWGKGEACKIVCTQPRRI
SATSVAERISFEKGENVGDSVGYKIRLESKGGRHSSIIFCTNGILLRVLVSKGTDRLKPE
ALRKAAKRDISDITHIIVDEIHERDRYSDFMLAILRDMLASYPHLRLILMSATIDAERFS
QYFGGCPIIRVPGFTYPVKTFYLEDVLSILKSTGNNNLDSTLLSLPVEDPKLIEDYGVAL
DEAINLAWSNDEFDPLLDFVSSEGTPQVFNYQHSSTGLTPLMVFAGKGRVADVCMMLSFG
ADCHLKANDDTTALDLAERENHREAAEMIKQHMENLLSNSVEEQQLLDKYLATNNPEIID
VALVEQLLRKICNDSKDGAILVFLPGWDDINRTREKLLSASFFKDSSKFVVISLHSMVPS
VEQKKVFKRPPPGCRKIVLSTNISETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSAW
ISKASAKQREGRAGRCRPGVCYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNC
KIEDFLRKTLDPPVFETIRNAVIVLQDIGALSVDEKLTELGKKLGSLPVHPLTSKMLFFA
ILLNCLDPALTLACASDYRDPFTLPMLPHEKKRATAAKAELASLYGGHSDQLAVIAAFEC
WKSAKEKGQEAQFCSQYFVSSGTMHMLAGMRKQLQTELIRNGFIPEDVSSCSLNARDPGI
IHAVLVAGLYPMVGRLLPPHKSGKRSVVETASGAKVRLHPHSNNFKLSFKKSDGRPLIIY
DEITRGDGGMHIRNCTVIGPLPLLLLATEIVVAPGKGNDDDDEDCDDDSDGDDIDEDDSE
GDGKEANNKLNGQQGEKIMSSPDNTVAVVVDRWHSFESTALDVAQIYCLRERLTAAIFFK
ATHAREVLPPMLGASVYAIACILSYDGLSGISLSLESVDSLTSMVNATEIDNSASGRRRM
GQNPNNFLKTLMSHGTRHKSPSKHHKNKGAENWNSPPTYNAWSPYMPPSLTSNQRPSSQR
PSFSGYGSSMHGPYGPRGDSFKRQRGNGSGK
NT seq 3696 nt   +upstreamnt  +downstreamnt
atgacgagatcagggaagaaaaggcagaaggatggagaacagaacaaccctggcgttgct
gaaggcactcggattcgaatctctagagcccttcaagagttccgagaaacacacaacgaa
gtgtacacatttgaagccaatctgacgaaccacgaacgtgctgtggtgcatgaggtatgc
aggaaaatgggcatgacatccaaaagttctgggcgtggaagtcagcggcgtgtttctgtt
tataaaaccaaaaagaaggtggacactaagaaagaagagggaaatccttatttgaatttt
tcagaagaggcgaaagaagttttattggacctatttacacgttatccacctgatgataaa
gagatggtcacgcaaatggttgaaaatggtagtggaaagactgagaaaatatggggaaaa
aaggatgatatttttggcaggccctcaatgaacaaggcagaaattgcaaagaaagtggaa
ttgttagcttctaggatagaggaggatcctcacttgagacagattactgaagggaggtct
aagcttccaattgcttcctttaaggatgtcattacgtcaacaatagaatctcatcaggta
gtgctcatatctggtgagactgggtgcggaaaaaccacgcaggttcctcaatttgttttg
gactatatgtggggtaagggggaagcatgtaaaatagtatgtactcaacctcgacgtatt
tcagcgacatcagttgctgagagaatctcttttgagaaaggagaaaatgttggcgatagt
gttggatacaagatacggttggaaagcaaaggtggaaggcactcatctatcatattttgc
acaaatgggattctactgagagtcttggtctcaaaaggcactgataggttgaagccagaa
gctttacgcaaagcagcaaagagagatatttctgacataacgcacataattgtggatgaa
attcatgaaagggatcgctactctgatttcatgctagcaattctcagagacatgcttgcc
tcttaccctcatctacgtctgatactaatgagtgctactattgatgctgaacgattttca
caatattttggtggctgcccaataatacgagttcctggatttacttatcctgtcaaaaca
ttttatttggaggatgtactttctatcttgaaatcaacaggaaataataaccttgattct
actttgctaagcctcccagttgaggaccccaagttaattgaggactatggggttgcctta
gacgaagctattaatttggcttggtcaaatgatgagtttgatcctctacttgatttcgtt
tcttcggaagggaccccacaagttttcaattaccagcatagttcaactggactaacacca
ctaatggtgtttgctggaaagggtagagttgctgatgtttgtatgatgctatcttttggt
gctgactgccatttaaaagccaatgatgatacaactgcactggacttggcagaaagagaa
aatcatagagaagctgctgaaatgatcaaacaacacatggaaaatctcctttccaattct
gtggaggaacagcagttacttgataaatatctagcaactaacaaccctgaaattattgat
gttgccctggtagagcagttactaaggaaaatatgcaatgactcaaaggatggagctatt
cttgttttccttcctggatgggatgatataaataggactcgggaaaaattactttctgcc
tccttttttaaagattcttctaagtttgtggtaatttctcttcattctatggtaccatct
gtggagcaaaagaaggtttttaaacgcccacctccaggttgccgcaaaattgttctctca
accaacatttccgagaccgccattaccattgatgatgttgtttatgtcatagacagtggt
cgaatgaaagaaaaaagttatgacccttacaataatgtatcaactcttcagtctgcttgg
atttcaaaagcaagtgctaagcaacgggagggacgtgcaggccgctgccgtcctggagtc
tgttatcatctttattctaaacttagagcggcatcgctaccagatttccaagttcctgaa
ataaagagaatgccaatcgaggaactctgtttgcaggtgaagttgcttgatccaaattgc
aaaatagaagatttcttgcggaagacattggaccctccagtttttgaaaccatacgcaat
gcagttattgttcttcaagatattggagccttgtcggtggatgaaaagctgacagaactt
gggaaaaagctaggttctctaccagttcatccattaacaagcaagatgcttttctttgcc
atattgttgaactgccttgacccagctttgactcttgcatgtgcctctgactatagagat
ccattcactcttcccatgttaccacatgaaaagaagagagcgactgctgctaaagctgag
ttggcttcactttatggtgggcatagcgatcagctagcagtcatagcagcatttgagtgc
tggaagagtgcaaaggaaaaaggtcaagaagcacagttttgttctcaatactttgtttct
tcaggcacaatgcatatgctcgctggcatgcgtaagcagcttcagactgaactaatccgg
aatgggtttattccagaagatgtatcgagttgtagcctaaatgcaagggacccaggtata
atccatgctgtccttgtggctggtttgtatcctatggtgggaagattgctaccacctcat
aaaagtggaaaacgatctgttgtagagactgctagtggtgctaaagttcgcttgcaccca
cactccaataattttaaattgtcatttaagaaatctgacggtcgccctttgatcatatat
gatgaaataacccgaggggatgggggtatgcacataaggaattgtactgtcatcgggcca
ctcccattgttattgcttgcaacagagattgttgtggctcctggaaagggtaatgatgac
gatgatgaggattgtgatgatgacagtgatggtgatgatattgatgaagatgacagtgag
ggagatggaaaggaagcaaataataagttgaacgggcaacagggtgagaagattatgtcc
tctcctgataatactgttgctgtggtggttgatcgatggcattcttttgagtcaacagct
cttgatgtagcccagatatactgcttgagggagcgactgactgcagcaattttcttcaaa
gcaacgcatgcccgtgaagttcttcctccaatgcttggggcttctgtctatgcaatagca
tgcatactatcttatgatgggttatcagggatctctttgtcattggaatccgtggactca
ctgacttcaatggtgaatgcaacagaaattgacaattctgcatcagggagaagacgaatg
ggtcaaaatccaaacaatttccttaaaacactaatgagccatggcacaaggcacaaatct
ccttccaaacatcacaaaaacaagggagcggaaaactggaacagcccaccaacctacaat
gcatggtctccatatatgccgccatccttgacatcaaaccagaggccttcatcacagcgg
cccagtttttctgggtatggttcgagcatgcatggaccgtatggtccaagaggagattct
tttaagcggcagcgtggaaatggctctgggaaataa

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