Vitis vinifera (wine grape): 100261209
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Entry
100261209 CDS
T01084
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100261209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100261209
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
100261209
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
100261209
DNA repair and recombination proteins [BR:
vvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
100261209
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
Ribosomal_S13
Motif
Other DBs
NCBI-GeneID:
100261209
NCBI-ProteinID:
XP_010654819
UniProt:
F6HXG7
A0ABY9CK80
LinkDB
All DBs
Position
9:complement(join(7503134..7503565,7503654..7503688,7504956..7505058,7505318..7505395,7506307..7506357,7512142..7512267,7512369..7512437,7526207..7526264,7528212..7528263,7528615..7528843))
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AA seq
410 aa
AA seq
DB search
MPELPEVEAARRAVEEHCVGKKITKAVIANDSKVIDGVSPSDFEASLLGKTIVSAHRKGK
NMWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVKDTDEWPSKYSKLFIELDDGLEL
SFTDKRRFAKVRLLEDPASVPPISELGPDALLEPMTIDEFIKSLSKKKIAIKALLLDQSY
IAGIGNWLADEVLYHARIHPLQVASSLTRESCETLHQCIKQVIEKAMEVGADSSQFPSNW
IFHSREKKPGKAFVDGKKIDFISAGGRTTAYVPELQKLSGTQAAKASVKPRKQTPMRKKE
ENDEDDDDDDALDEPASEEEKNTKRAKSKKGQNPKGGGKKPPAKRKVEESDNDSDDNDDN
NDDDDDDEDKDGDQKKAKRVTKNKQTKVEKTTKKKVEKSHKGKPMKKKVK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttccggaggtagaagccgcgagaagagccgtcgaagagcactgtgtgggc
aagaagatcacgaaagctgtgatcgctaatgactcaaaggtcatcgatggagtctctcct
tcagattttgaagcctctcttctcggtaaaaccattgtctctgcccacagaaagggcaaa
aacatgtggctccagctcgattcccctccttttccttccttccagttcggaatggcgggt
gctgtatatataaagggtgttgcagttacaaaatataagaggtctgctgtcaaggatact
gatgagtggccatccaaatattccaagttatttattgaactagatgatggtttggagcta
tctttcacagataaaaggcgatttgctaaagttcgcttgctcgaagatccagcttctgtg
cccccaatatcagagcttggcccggatgccctattggagccaatgacaatagatgaattt
atcaaatccttgagcaagaagaagattgcaattaaggctttactacttgatcagagttat
attgcaggcattggcaattggttagctgatgaagtgctttaccatgcaagaattcatcca
ttgcaagtagcttctagcttaaccagagaaagctgtgaaactttgcatcagtgcatcaaa
caggtcattgagaaagcaatggaagttggggcagatagtagtcagtttcctagtaattgg
attttccattcccgcgaaaagaagcctggcaaggcttttgtcgatgggaagaaaattgat
ttcatcagtgccggtggcaggacaacagcctatgttccagagctgcaaaagctaagtgga
actcaagctgcaaaagcatctgttaaaccaagaaaacaaacacccatgagaaaaaaggaa
gagaatgatgaagatgatgatgatgatgatgctcttgatgaaccagccagtgaggaagag
aaaaacactaaaagagctaaatcaaagaaagggcagaatcccaaaggtggaggtaaaaag
cccccagcaaaaaggaaggttgaggaaagtgacaatgatagtgatgataacgatgacaac
aatgatgatgatgatgatgatgaagacaaggatggtgatcaaaagaaggcaaagagggtg
accaagaataagcaaaccaaggtggagaagacaaccaagaagaaagtggaaaagagtcat
aaaggtaagccaatgaagaaaaaagtgaagtag
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integrated database retrieval system
