KEGG   Vitis vinifera (wine grape): 100262056
Entry
100262056         CDS       T01084                                 
Name
(RefSeq) uncharacterized protein LOC100262056
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100262056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100262056
   03400 DNA repair and recombination proteins [BR:vvi03400]
    100262056
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     100262056
Messenger RNA biogenesis [BR:vvi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     100262056
DNA repair and recombination proteins [BR:vvi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      100262056
SSDB
Motif
Pfam: DEAD RQC Helicase_C RecQ_Zn_bind HTH_40 HRDC ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 100262056
NCBI-ProteinID: XP_002275696
LinkDB
Position
6:join(9346822..9346854,9346988..9347100,9347194..9347269,9347367..9347509,9347669..9347755,9348505..9348588,9354635..9354842,9355013..9355098,9358445..9358673,9358877..9359000,9365656..9365792,9366528..9366636,9371373..9371415,9371595..9371766,9375158..9375228,9375363..9375456,9379067..9379279,9379404..9379613,9379765..9380163,9380247..9380372)
AA seq 918 aa
MRAEKMESTLKRYFGYSGFRPYQKDIIQKILERRDSLVIMATGSGKSLCYQLPPLILGKT
AIVISPLISLMQDQVMALKQRGIRAEFLASAQTDPTVHKNAESGTFHVLFMTPEKACSIP
GSFWSKLLKVGICLFAVDEAHCISEWGHDFRMEYKQLDKLRAILLDVPFVGLTATATKKV
RMDIINSLKMRDPNVFIGSFDRKNLFYGVKSFIRNSQFMDEFVGEISKFVASSDSTIIYC
TTIKDVEQIYKSLQEAGIKAGIYHGQMANSAREESHRIFIRDEVHVMVATIAFGMGIDKP
NIRHVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYNRGDFMKADFYCGEATGNQRRAI
MDSLVAAQNYCLQTTCRRKFLLEYFGEKFESDKCGNCDNCTISKRECDMSREAFLLIACI
NSCRGHWGLNMPIDILRGSRSKRILDAKFDKLPLHGLGKDHSSNWWKALAYQLISYGYLM
ESVKDVYKTVSVSQKGAQFLSSSTPAHQPKLVLQVTNEMVDDEEHEGTSGKFGELKGLAT
FEYEGFSETEGQLYHMLLDERMKFARGIGTAPYAICGNETIKKIALIRPSTKARLANIDG
VNQHFLTTYGDHFLQSIQHLSQALNLPLDGDASMQAAVVRKMQPVPNQQRKLTPAKYEAW
KMWQEDGLSIEKVANFPSRSAPIKDQTVLEYLLGAAQEGFAIDWTRLCDEVGLTREMFSD
IEAAITKVGSRDKLKPVKIESPEYISYAHIKVCLTLQDCGMSKEVIPPGNHNTLTADELP
SKASEASMDTMHKCLIRGPCEVETSVDNIIASCCLENEVTTSIPFTVDLDMHPPGVHDEI
FSLRKRQKIDEPEEESLIMQEATESSILDLLRNYDDGVPLSDVLKHFNGSREEYVVDLLS
NLEGEFMIFKKNNMYRLM
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgcgagcagagaaaatggagtcaactctcaagagatactttggatattctgggttcagg
ccttatcagaaggatatcattcagaaaatcctggagagaagagactccttggtcatcatg
gccaccggaagcggcaagtctctgtgctatcagcttcctcctctgattttgggaaagact
gctatagtgataagccctctgatatctttgatgcaagatcaggtcatggctttaaaacaa
aggggcatcagagccgagtttcttgcttctgctcaaactgatcccaccgtccacaaaaat
gcagagagtggtacatttcatgttttgttcatgaccccagaaaaggcttgctccattcct
ggcagcttctggtcaaagttactaaaggtggggatttgtctgtttgctgttgatgaagca
cattgcatatctgagtggggccatgatttcaggatggaatacaaacagttagacaagtta
cgtgctattcttctagatgttccatttgttggcttaactgcaactgctaccaaaaaggtt
cggatggacattattaattctctaaagatgagagatcctaatgttttcattggatccttt
gatcgtaagaatctcttctatggagtcaaatcttttattcgcaattcccaatttatggat
gagtttgtgggggaaatctcaaaatttgtggctagttctgactctaccattatatattgt
acaacaatcaaagatgttgagcagatttacaagtcacttcaggaggctggaataaaggct
ggcatttatcatggtcaaatggctaatagtgctcgtgaagaatcccacagaatttttata
agagatgaagtacatgtcatggttgccactattgcttttggaatgggtattgataaacca
aatataaggcatgtcattcactatggttgcccgaagagtcttgagtcctattatcaggaa
agtggacgatgtggtagagatggtatagcttctgtctgctggctttattataatagaggt
gacttcatgaaagcagatttctactgcggagaagccacaggaaatcaaagaagagctatt
atggactcactggtggctgcacagaactattgcttacagacaacctgccgaagaaagttc
ttgctggagtattttggggaaaaatttgagtctgataaatgtgggaattgtgataattgc
accatctcaaaaagggagtgtgacatgtctagagaagcatttcttttaatcgcgtgcatc
aactcctgtaggggtcattggggcctcaacatgcctattgacattcttcgtggatctcga
tcaaaaagaattcttgacgctaagtttgacaagcttccgcttcatggcctcgggaaagac
cactcatcaaattggtggaaagcactagcttaccaattgatttcttatggttatctgatg
gagtctgttaaggatgtatataaaaccgtaagtgtcagtcaaaaaggagctcaatttctc
agttcctcaacacctgctcatcaaccaaaattagttttgcaagtgactaatgaaatggtt
gatgatgaggagcatgaaggcacatcaggcaaatttggagagttgaaaggtttggctaca
tttgaatatgaaggattttcagagactgagggacaactctatcatatgcttctagacgag
agaatgaagtttgcaagaggcattggaactgctccatatgccatatgtggtaatgaaaca
attaagaagatcgcactgataaggccatctactaaagctaggttagcaaacatcgatggt
gtcaaccagcattttttaacaacatatggggatcattttcttcaaagcattcaacatcta
tcacaagcactaaaccttcccttggatggggatgcaagtatgcaagctgctgttgtgaga
aaaatgcaaccagtaccaaaccaacagagaaaattaactccagcaaagtatgaagcttgg
aaaatgtggcaggaggatggtctctcaattgaaaaagttgctaacttccctagtaggtca
gctcccataaaggatcagacagttcttgaatatttgcttggggctgcccaagagggattt
gcaattgattggaccagactatgtgatgaggttggacttacacgtgagatgttctcagat
attgaggctgctatcacaaaagttgggtcaagagacaagttgaagcctgttaaaattgaa
tcaccggaatatataagttatgcccacatcaaggtatgtttgacactgcaagactgtggg
atgtcgaaggaagtaattccacctggcaatcacaatacattgacagctgatgaacttcct
agcaaagcatcagaagcatcgatggatactatgcataaatgcctcattcgaggaccttgt
gaagttgaaacatcagttgataatataattgcttcttgttgcttagaaaatgaagtcacc
acttccattcccttcacagtagacctggacatgcatccacctggagttcatgatgagata
ttttccttgaggaaacgtcagaaaattgatgaaccagaagaggaaagtttgatcatgcag
gaggcaacggagagctccatattagacttgcttaggaattatgatgatggggttcctcta
tctgatgtattgaagcacttcaatggatctagagaagaatatgtagttgatctgctgagc
aatcttgaaggtgagtttatgatattcaagaagaataatatgtataggcttatgtaa

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