Vitis vinifera (wine grape): 100262342
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Entry
100262342 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100262342 isoform X3
KO
K14416
elongation factor 1 alpha-like protein
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100262342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100262342
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100262342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
100262342
NCBI-ProteinID:
XP_002268387
LinkDB
All DBs
Position
3:join(17160224..17160323,17163901..17164059,17164817..17164894,17168846..17169294,17169405..17169515,17169616..17170103,17171793..17171961,17172954..17173193,17173288..17173422,17173527..17173658)
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AA seq
686 aa
AA seq
DB search
MPRKGNYQADYYDKDYDYEDYEDYDYDLDVEENGEAVETNQETVRRGIWRCSICTFDNDE
SMSACDICGVLRYPLVNIRNNNDTKTAPFKFDVPSPDELVSNGMHASKMASKANLTTSVS
SEVPSRVIDKHGLVNKQSSAKRSDRSSDLMPKGRHENVGDRDFSESGAANTESSAKGSDS
SSMLMPKGRNNSKDESNISSIDKNKRQSISGNLLSSMTLNVKSEHSKSSSAGKSVSDVHY
KPEKWMIPDQENDVLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQG
KGSFAYAWALDESTEERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQAD
SAILVIDASIGAFEAGVDSTGGQTREHAQLIRSFGVDQIIVAVNKMDAVEYSKERFDFIK
MQLGTFLRSCGFKDSSVSWIPLSAMENQNLVEAASDARLSSWYQGPYLLDAIDSLQPPTR
DFSKPLLMPICDVIKPSSSGQVSACGKLEAGALRSGFKVLVMPSGDVATVRSLERDSQTC
AIARAGDNVAVCLQGIDGSNVMAGGVLCQPDFPVAVATRLELKVLVLDIKTPILMGSQLE
FHTHHSKEAATIVKILSLLDPKTGKVTKTAPRCVTAKQSAVLEVALSGAVCVEEFSNCRA
LGRAFLRAMGRTLAVGIVTRVIKDHE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaaggaaactatcaagctgattattatgacaaagattatgattatgaggat
tatgaggattatgattatgatcttgatgtagaagaaaatggagaagctgttgagacaaac
caggaaactgttcggcgtgggatttggcgttgctcaatttgcacatttgataatgatgag
agtatgtctgcatgtgatatttgtggggttcttcgctatcctttggttaacattcgcaac
aataatgatacaaaaacagcccctttcaagtttgatgttccttctccagatgaattagtt
tctaacggaatgcatgcctccaaaatggcttcaaaagccaatctcaccacttcagtatct
tctgaagttccgtcaagagtcattgataagcatggtttagttaataaacaatctagtgct
aaaagatcagataggtcctctgatttgatgccaaaaggcagacatgaaaatgtgggtgac
agagacttttcagagagtggtgcagcaaatacagagtcaagtgctaaaggttcagatagc
tcatccatgttgatgccaaaaggaagaaataatagcaaggatgaaagcaatatttcttca
attgacaaaaacaaacgtcaaagtatttctggcaatttgttgtccagtatgactttgaat
gttaaatctgaacactcaaagagcagtagtgctggaaaatcagtttcagatgtgcactat
aagcccgagaaatggatgatccctgatcaagaaaacgatgttctgactcaattgaatctt
gcaattgttggtcatgttgattctgggaaatcaactctctcaggaagactgctacaccta
ttgggacgaatatcccaaaaagaaatgcacaaatatgagaaagaggctaaactacagggc
aagggttcgtttgcttatgcttgggcattggatgagagcacggaagaaagggaaaggggc
ataactatgactgtagctgttgcttattttgactccaaaaagtatcatgttgttgtgctt
gactccccaggtcataaagattttgttccaaacatgatttctggcgcaacacaagcagat
tctgcaattctcgttatagatgcctcaattggtgcattcgaagcaggtgtggatagtact
ggagggcaaacaagggaacatgcacaacttattagaagttttggtgttgatcaaattata
gttgcggttaacaaaatggatgctgtggaatactccaaggaacggtttgatttcatcaaa
atgcagcttggaacttttctccgttcttgtggtttcaaggattcttctgtctcctggatt
ccattgagtgccatggaaaatcaaaatctggtggaagcagcttctgatgctcgtttgtca
tcctggtatcaaggaccttacctgttggatgctatagattccctccaacctcccacaaga
gatttttcaaagcctctacttatgccaatatgtgatgtcatcaaaccatcatcatcagga
caggtgtctgcatgtggtaaattggaggctggagctcttcgaagtgggttcaaggttcta
gtcatgccatctggagatgtggcaacagtgcgttccctagaacgtgactctcagacttgt
gccattgcaagagcaggagataatgtggctgtttgtctacaaggtattgatggaagtaat
gtgatggctggtggtgtgctttgtcagccagactttccagttgcggttgcaactcgtttg
gagctgaaggttcttgtcttggatattaaaaccccaattttaatgggctctcagttggaa
tttcacacacaccattcaaaggaggctgcaacaattgtaaagatactgtcgttgctcgat
ccaaagactggaaaagtaacgaagacagctccccgttgtgtaacagcaaagcagagtgca
gtactggaggtggctttgagtggagcagtatgcgtggaagagttctcaaattgcagagct
cttgggagagcgtttttaagagcaatgggaagaactcttgctgtaggcattgtaacccga
gtaataaaggaccatgaatag
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