Vitis vinifera (wine grape): 100262803
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Entry
100262803 CDS
T01084
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100262803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100262803
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100262803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
100262803
NCBI-ProteinID:
XP_010648497
LinkDB
All DBs
Position
4:join(2850882..2850993,2851635..2851748,2853503..2853603,2854331..2854351,2855021..2855093,2855184..2855251,2855636..2855768,2856816..2856931)
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AA seq
245 aa
AA seq
DB search
MSMEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE
KACIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPC
AINAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISI
IPEGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPND
SSRAG
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggaaataggtagagatgatggccgcacagcaaatcagctgagaccactagct
tgttctcgcaacatcctcaatcgtgctcatggctctgcaagttggtctcaaggagatacc
aaagttcttgcagctgtttatggcccaaaagcaggaacaaaaaagaatgaaaaccctgag
aaggcttgtattgaagtcgtttggaaacccaagacagggcagattgggaaaccagaaaag
gagtatgaggtgatactgaagaggactttgaaaagcatctgccttttgaatatcaatcca
aataccacaacctcaattataattcaggttgtcagtgatgatggtgctcttctgccatgt
gccataaatgcggcatgtgcagcccttgtagatgctgcaattcctctcaagcatcttgct
gttgcaatatgttgctgtctgacagaaagcggatatgttatactagacccaaccaaggta
gaagagcagaaaatgaaggcatttgcatacttagtcttccccaattcagcgatctcaatc
attccagaaggatcgtcacacatggaaggggagctgatggaacatgggatcatcacatct
gttacacatggagtaatgtcagtggatgattatcttcactgtcttgaacgaggacaggct
gcaagcacaaagatgtcagcttttctaaggagaagcttgcaatcacaagccccaaatgac
tcatctagggctggatga
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