KEGG   Vitis vinifera (wine grape): 100262947
Entry
100262947         CDS       T01084                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
vvi  Vitis vinifera (wine grape)
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:vvi04812]
    100262947
Cytoskeleton proteins [BR:vvi04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     100262947
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Katanin_con80 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR36-Utp21_1st WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SPT8 eIF2A Beta-prop_IFT140_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_IP5PC_F Beta-prop_RIG_1st Beta-prop_WDR19_1st PROPPIN PAN2_N VPS8_N
Other DBs
NCBI-GeneID: 100262947
NCBI-ProteinID: XP_010655954
UniProt: F6HVX7 A0ABY9CSI6
LinkDB
Position
10:complement(join(27332971..27333034,27333154..27333222,27333322..27333438,27339205..27339317,27339480..27339554,27346900..27347025,27350005..27350126,27350203..27350262,27356509..27357024,27357202..27357436,27357563..27357706,27357809..27357883,27358016..27358086,27360252..27360354,27361137..27361363,27361470..27361587,27361816..27361946,27362159..27362186))
AA seq 797 aa
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSELLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKSHEGQLQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETAGVRCMTFNPDGK
TLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDLSR
IEPYAVGNVTRLNGHSESKSSSSGNLSVLTENTTKASLGRLSISQNTELIMKETKSLGRL
SVSQNSDPVDKETKCLASTGSVPGTPQRVNLNTGPKTTLASSTTAPKRISAKAHSTANVS
AFNKSDVIPVIVPRTNVRLDQAAESRKEVGVSGRTIPFSLQSRTSDFRKSPNRRDELERP
TVSVPSENAGSKATDLSTVADRNIFPAVKCSTPGISAAERNVKDDRCIGSGRQEMNSTME
PPPNYHHENYETRVHRANRDACSIEVQKGGRTRSLVANWEKREISPTYEGQTSSNFSGTV
SASNMLPFSARGYTPSTEKEAVPASDEDAITDIMEQHGQFVGSIQSRLSKLQVVHRFWER
NDIKGAIGAMEKMADHSVFADVISILREKPDVVTLEICTSLLPLLTSLLESEMDRHLGIS
LEMLLKLVRIFGSVIHSTLSASSSVGVDIQAEQRLERCNLCFIELEKIKHCLPALTRRGG
SVAKLAQELNLALLEVL
NT seq 2394 nt   +upstreamnt  +downstreamnt
atgacgaccaaacgtgcttacaagctacaggaatttgtagcacactcttccagtgtaaac
tgtctcaagattgggaggaagtcatccagggttcttgtcaccggtggagaagatcacaag
gtgaatctttgggccatcggcaagcccaatgccatactgagtttgtctgggcacacgagt
ggaattgattcggtaagttttgactcttcagagctgttggtggctgcaggagcggcaagc
ggcacaatcaagctatgggatttggaggaggcaaagattgttcgcacgcttactggccac
agatcaaattgcatatctgtggacttccatccatttggggagttctttgcatctggctct
ctggacacaaatcttaagatttgggatatccgaaagaaggggtgtatccacacttataag
ggccatacacgaggggtcaatgcaatcagatttacaccagatggccgctgggttgtgtct
ggtggagaggacaacactgtgaagctgtgggatctgactgctggaaagttgttgcacgat
ttcaaaagtcatgagggccagcttcagtgcatagattttcatcctcatgaatttctgctg
gcaacaggttcagctgatagaactgttaaattctgggaccttgaaacttttgagttgatt
ggttcagctggacctgagaccgctggagtgcgttgtatgactttcaatcctgatgggaaa
actctactctgtgggttgcatgaaagtctgaaagttttttcatgggaaccaataagatgc
catgatgctgtggatgtggggtggtctagattatcagatcttaacattcatgagggaaag
ctcctgggctgctcatacaaccaaagttgtgttggagtctgggttgtggatctctcgcgc
atagagccatatgcagttggtaatgtgactcgattaaatggtcattcggaatctaaatct
agttcaagtgggaatttgtcagtactgacagaaaacaccacaaaggctagtttgggcagg
ttatccatttcacaaaatacagagctgattatgaaggaaacaaaatctctgggaaggctg
tctgtctctcaaaattcagatcctgttgacaaggagacaaaatgtttggcatccacagga
agtgtacctggtactcctcaaagggtcaatttaaacactggtccaaaaacaactttggca
agttcaacaacagctccaaagaggatttctgcaaaggcccattcaacagcaaatgtttca
gcctttaataaatcagatgtgatacctgtaattgtccccagaactaatgtgagattggat
caggcagctgaatccagaaaggaagttggtgtttctggaagaacaattccattctctttg
cagtcaagaacaagtgatttccggaagtctccaaatagaagagatgaattagagagacca
actgtttctgtcccatctgaaaatgcaggttccaaagctactgatcttagcacagttgca
gataggaatatttttcctgcagttaagtgctcaactccaggaatttctgcagctgaaaga
aatgtgaaagatgataggtgtattggatctggcaggcaagaaatgaattcaacgatggag
ccacctcctaactaccaccacgaaaattatgagacacgggtgcatagagcaaacagagat
gcatgctctattgaagttcaaaaaggaggaagaacccgttcgcttgttgctaactgggag
aagagagaaatatctcctacttatgagggacagacatccagtaatttctctgggactgtt
tctgcatctaacatgctcccatttagtgcgagaggatatactccatctactgaaaaggaa
gcagtgcctgccagtgatgaagatgctattacagatataatggaacaacacggtcaattt
gttggctctatccagtctcgcttatccaagttacaggtagtccatagattttgggaaagg
aatgacattaagggggctattggtgcgatggaaaagatggctgatcattctgtctttgct
gatgtaatcagcattttgagagaaaaacctgatgttgtgacactggaaatttgcacttct
ctcctgccactcctcacgagtcttcttgaaagtgagatggataggcatttaggcatttct
cttgagatgctccttaagctggtcaggatatttggttcagtgatccattcaactttatca
gcatcatcatctgttggtgtagatattcaggcagagcaaagactggagcgctgcaatctc
tgctttattgagcttgaaaagatcaaacactgcctgcctgccctaaccagaagaggaggt
tcagttgcaaaattggcgcaggagctgaatctagcacttctagaagtactatga

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