Vitis vinifera (wine grape): 100263065
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Entry
100263065 CDS
T01084
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
vvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100263065
09123 Folding, sorting and degradation
03018 RNA degradation
100263065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100263065
03041 Spliceosome [BR:
vvi03041
]
100263065
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100263065
mRNA cycle factors
Stress granule specific factors
100263065
Spliceosome [BR:
vvi03041
]
Complex C
Other components
Complex C specific factors
100263065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_RdRP1_2
RRM_7
RRM_Nup35
YflT
Motif
Other DBs
NCBI-GeneID:
100263065
NCBI-ProteinID:
XP_010645822
UniProt:
F6HJE0
A0ABY9DTJ1
LinkDB
All DBs
Position
18:join(22800539..22800815,22802429..22803207,22803316..22803393,22803483..22803572,22804088..22804393,22804520..22804744,22804871..22805095)
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AA seq
659 aa
AA seq
DB search
MAAATQSPAVQTPQSLSPVAVQQSTAMTGHTAAAGFANASLYVGDLDTAIGEGQLYDLFQ
QVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKPIRIMFSHRDPS
IRKSGFANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAA
QNAIKRLNGMLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDDDLKNIFGK
YGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSER
EAELRAKFEQERKNKFEKFKGTNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGL
SKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPGAM
TPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIPTQPAGYGFQQQLMPGMRPGVAPNFIMP
YQLQRQGQPGQRMGVRRGGNSQQMQHQQQPLLHRNSNQSYRYMANGRNGVDPSMVPQGLM
GPVMPLPFDVSGMPVSPMDIQRTGPVPMSTLASALASTTPDNQRLMLGEQLFPLVERIER
ETAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVLRASSSGNDVGDQLGSLMLNE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcgactcagtcaccggcggttcagacaccgcagtcgctttctccggtggcg
gtgcagcagtccacggcgatgacgggacatactgcggcggcaggattcgccaatgcgtct
ctgtacgtgggcgatctcgacactgccatcggcgaaggacaactgtacgatctgttccag
caggttgcgccggtgttgtccattagggtttgtagggatcaggcgaggcgggcctccctt
ggctatgcgtacgtgaatttcgcaagccctcaggatgctactaatgctttggagcatttg
aatttcacacctctcaatgggaaacctatcaggattatgttctctcatcgtgatcctagt
attcgaaaaagtggctttgccaatgtttttattaaaaacttggacccctcaatagataac
aaggcattgcttgatacatttgctgcctttggcactgtactctcttgcaaaatagccctt
gacaacaatggtcaatccaaaggatatggatttgtacagtttgagcaggaggaggctgcc
caaaatgcaatcaaacggttgaatggcatgttaataaatgataaacaagtttatgttgga
cttttcgttcgtcaccaagaaaggaaccgaggaaatggttcaccaaagtttactaatgtg
tatgtgaaaaatttgtctgaaacaaccactgatgatgaccttaaaaacatttttggaaag
tatggttccatcactagtgctgttgttatgagggatgcaagtgggatgtccaaatgtttt
ggttttgtaaacttccagagctcagattctgctgctgctgcagttgagcatctgaatggt
gccactttcaatgatgacaaggtctggtacgtggggaaggctcaaaggaaatcagagagg
gaggctgagttgagagcaaaatttgaacaggaaagaaagaataaatttgaaaaatttaaa
ggcactaatttgtatctgaaaaatcttgatgatagcgtaaatgatgaaaaactgaaagag
ctattttctgagtttggaactattacgtcatgcaaggtcatgctagatccacaagggctc
agcaaaggctctggttttgttgcctttttaacccctgaggaagctacaagagctttaaat
gtgatgaatggaaagatgattgggcgcaaacctctgtatgtagctgtggcccaacggaaa
gaggaaaggaaggcccgcctgcaggcgcaatttgctcaaatccgatcacctggggcaatg
acacccttgcaatctggagtgcctggatttcattctggggcacctagacttgcccctcag
cagctctattttggtcaaggtactcctggtctaatacccactcagccagcagggtatgga
ttccagcagcaactcatgcctggaatgcggcctggtgttgcaccgaacttcattatgcca
taccagcttcagaggcaaggacagcctggacaacggatgggtgtaaggagaggtgggaac
tcccaacagatgcagcatcagcaacagccattgctgcaccgaaactccaatcaaagctat
cggtacatggcaaatggacggaatggagtggacccatccatggttcctcaaggcctcatg
gggccagtgatgccattaccttttgatgtttctgggatgcctgtttctcctatggacatt
cagcgaactgggccagtgcctatgtcaacacttgcatctgctcttgcttctactaccccc
gataaccagcgactgatgttgggtgaacagttgtttcctcttgtggagcgtattgaacgt
gaaactgcaggaaaagtgactgggatgttgctagagatggaccaaacagaggtgctccat
ctcattgagtctcctgatgctctgaagaacaaagtggctgaggctatggatgtccttcgt
gcatcttcatcaggaaatgatgttggtgatcagcttggctcgttgatgctcaatgaatga
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