KEGG   Vitis vinifera (wine grape): 100263947
Entry
100263947         CDS       T01084                                 
Name
(RefSeq) uncharacterized protein LOC100263947
  KO
K07573  exosome complex component CSL4
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100263947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100263947
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     100263947
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     100263947
SSDB
Motif
Pfam: Ammonium_transp EXOSC1 ECR1_N DUF3082 ECR1_N_2 RRP4_S1
Other DBs
NCBI-GeneID: 100263947
NCBI-ProteinID: XP_059592558
LinkDB
Position
4:complement(join(15151973..15153513,15163547..15163646,15163743..15163833,15163934..15164004,15164086..15164184,15165347..15165423,15165514..15165646,15171233..15171280,15171382..15171441,15172080..15172526,15182085..15182176,15182831..15182912,15185538..15185622,15194896..15194984,15195175..15195249,15207251..15207424))
AA seq 1087 aa
MQEREEAEELVTPGEVLGKGSQLKAGRGAYFLPQNGTVYASLTGRRSLIPPSPLSSDQRP
TVEVTGHSAHGAIPEPGSIVIARVTKVMARMASADIMCVGPKSVREKFTGIIRQQDVRAT
EIDKVDMHSSFRPGDIVRALVLSLGDARAYFLSTAKNELGVVSAESAAGATMVPMSWTEM
QCPLTGQIEQRKVAKVGGQVGYKPQIKYIYIRKKKKKIDLKSHSSIIFHSLVGWALHTLK
LQNPNTTKNHKAQLPKTTNTTIPAPEMASLLHLRHPHSVFNLSSSSPTLLFLHSPHHIPL
KPSHSTSITLKFLHFRPHTAPFALTDSDSPKSLSPNPETPQTLLQELADSFDLPSDYFAQ
LPRDLRLDLNDAAFDLSSGPVIDECGQELGETLLNLSRAWEQADTSSSSTLVSKLPSLEG
SLTDNAKTAFGKRLVSAGRRFQSMGQYGQGELQRIAKAMTMTGKLLCASSVSAETNVQPK
EETRMLKFGELQVALTSDKANIGAAIGFVFGILSWQLSQGVQSIPESSLQYANDNALLLA
KSLRGALLAICYSSTALSALATVGLILLARELKSDMASLTCSAADLTPLLAGAATNTTAV
ADYLCSRFDTIAARLSDTTYAVDSTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLT
NVLDAAAGAISYYLFGFAFAFGSPSNGFIGRHFFGLKDFPSSSFYYTFDYSYFLYQWAFA
IAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWACPTRSNGDLLFGSG
AIDFAGSGVVHMVGGVAGLWGAFIEGPRIGRFDRTGRSITLRGHSASLVVLGSFLLWFGW
YGFNPGSFITILKSYGESRGYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRLLAGHWNVT
DVCNGLLGGFAAITSGCSVVEPWAAIVCGFVAAWVLIGCNKLAERVEYDDPLEAAQLHGG
CGAWGLLFTGLFATKKYVREVYAGPSDRPYGLLMGGGGKLLAAQFIQIIVVSGWVTVTMG
PLFYALHKLKLLRISSEDEMAGMDLTRHGGFAYVYNEDDESTFKPGLPLGRVEPTNSRQN
SPPQPAV
NT seq 3264 nt   +upstreamnt  +downstreamnt
atgcaagaaagagaggaggcagaggagttggtgacgccaggagaggtgttggggaagggt
tcgcaactcaaggcagggaggggagcctacttcttaccccaaaatggcaccgtttatgct
tccctcactggtcgccgctctctcatccctccttctcccctttcatctgaccagaggcca
actgtcgaagtaacaggtcatagtgcccatggtgccattcctgagcctggttccattgtc
attgccagggttactaaagttatggctagaatggcctcagctgatataatgtgtgttggc
cccaagtctgtgcgagaaaaatttactggaataattaggcaacaagatgttagagcaaca
gaaatagacaaagtggatatgcactcgtcttttcgccctggtgacattgtcagagctcta
gttctctccctcggagatgcacgggcatactttctatcaactgcaaagaatgaactggga
gttgtatctgcagagagcgcagcaggtgcaactatggttccaatgagctggacggagatg
cagtgcccattgacaggacaaatagaacaaagaaaggttgcgaaagttggagggcaagtt
ggatacaagcctcagattaaatatatatatataagaaaaaaaaaaaagaagattgatttg
aaatcccattcaagcattatctttcactccctggttgggtgggctctacacacactaaaa
ctccaaaatcccaacacaaccaagaatcacaaagcccaacttcccaaaactaccaatacc
acaatacctgcacctgaaatggcctctcttcttcatcttcgtcatccacactctgtcttt
aacctctcttcttcctctcccactctactctttctccactctcctcatcacatccctctt
aaaccctctcactccacctctatcacccttaaattcctccacttcagaccccacactgcc
ccatttgctctcactgactctgactcccccaagtccctcagccccaaccccgaaaccccg
caaacccttctccaagaacttgctgatagttttgatcttccatcggattactttgctcaa
cttcctcgtgatcttcgtttagatctgaatgatgcggcttttgatctttcaagtgggcca
gtgattgatgagtgtgggcaagagctgggagagactttgttaaatctatctcgagcatgg
gaacaagctgatacatcaagttccagtactttagtgagcaagctcccttcattagaaggc
tctttgaccgataatgccaagacagcatttggcaagcgattggtatctgctggaagaaga
tttcaatccatggggcagtatggtcaaggtgaactacaaaggattgcaaaagcaatgact
atgactgggaagctcctgtgtgcaagttcagtgtctgcagagaccaatgtacaaccaaaa
gaagaaactaggatgctgaagtttggagaacttcaggttgctttaacatctgataaagcc
aacattggggctgcaattggttttgtttttgggatactctcatggcaactaagtcagggc
gtccaaagcatacctgagagctcattgcagtatgcaaatgataatgctttgcttctggct
aagtctctaaggggagctctacttgcaatttgctactcatcaacagccttgtctgcctta
gctactgtggggcttattttgcttgcaagagagctcaagtcagatatggcttctctcacc
tgctccgcagcggacctcacccccctcctagccggtgcagctaccaacaccactgccgtc
gccgactacctctgctcccgctttgacaccatcgccgccagactctccgacaccacctac
gccgtcgattccacctaccttctcttctctgcctaccttgtcttcgccatgcagctcggc
ttcgccatgctctgcgccggttccgtccgcgctaaaaacaccatgaacatcatgctcacc
aacgtcctcgacgctgctgccggagccatctcctattacctcttcggcttcgctttcgcc
tttggctctccctccaacggcttcatcggccgtcatttctttggcttaaaggattttcct
tcatcctctttctactacactttcgactacagctacttcctctaccaatgggccttcgct
atagcggccgccggcatcaccagcggctccatagcggagcggacccagttcgtggcttac
ctcatttactcttctttcttgactggctttgtttacccggttgtttcacactggttttgg
tcccctgatggctgggcctgcccgacccggtccaacggagaccttctattcggatcggga
gccatagattttgccgggtcgggcgtggttcatatggtcggcggcgttgcaggtctgtgg
ggggccttcattgaaggacccaggatcggacggttcgacaggaccggccgatctataact
ttacgagggcatagtgcttctttggttgtgctcggttcgtttttgctttggttcggttgg
tacgggttcaaccccggttcgttcatcacgatattaaaatcatacggtgagagtaggggg
tattatggtcaatggagcgcagttgggaggacagccgtcacaactacattggctgggtgc
acagctgcgctcaccaccttatttggcaaacgcctattggcgggtcactggaacgtgaca
gatgtctgtaacggtctcttaggaggttttgcggccatcacctctgggtgctccgtggtg
gaaccatgggcggcgattgtgtgcgggttcgtggcagcttgggttctcattggatgcaac
aagctagcggagagagtagagtacgatgatcccctagaggcggcgcagcttcatgggggg
tgcggcgcgtgggggttgttgttcacgggacttttcgcgacgaagaagtatgtgagagag
gtgtatgcggggccgtcggatagaccgtacgggttgctgatgggcggcggtgggaagctg
cttgcagctcagtttattcagataatagtggtgtccggatgggtgacggtaacaatgggc
ccattgttttacgcactgcataagctgaaattgttgaggatctctagcgaagatgagatg
gcaggaatggatctgaccaggcacggtggatttgcttatgtgtacaacgaggatgatgag
tcgacatttaaaccgggtcttcccttggggagggtggagcctaccaactctcgtcagaac
tcaccaccacaaccagccgtgtga

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