Vitis vinifera (wine grape): 100263985
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Entry
100263985 CDS
T01084
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100263985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100263985
03041 Spliceosome [BR:
vvi03041
]
100263985
03032 DNA replication proteins [BR:
vvi03032
]
100263985
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
100263985
Spliceosome [BR:
vvi03041
]
Complex A
U1 snRNP components
Sm proteins
100263985
U2 snRNP components
100263985
Complex B
U1 snRNP components
100263985
U4/U6.U5 tri-snRNP components
100263985
Complex C
U2 snRNP components
100263985
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
100263985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
100263985
NCBI-ProteinID:
XP_002272246
UniProt:
D7SYP2
LinkDB
All DBs
Position
7:join(22046137..22046142,22046314..22046401,22046482..22046519,22046984..22047048,22049116..22049185)
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AA seq
88 aa
AA seq
DB search
MATVPLNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGNL
GEILIRCNNVLYLRGVPEDEEIEEADRD
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgtaccactgaaccctaagcccttcttgaataacttgactgggaagcctgtc
attgtcaaactcaagtggggaatggagtacaaaggttatctcgtatcagtggattcatac
atgaacttgcagctggccaacagtgaagaatacattgatggacagttcactggaaacctt
ggagagattttgatcagatgtaacaatgttctctatcttcgtggggtaccggaggatgaa
gaaatagaagaagctgaccgagactag
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