Vitis vinifera (wine grape): 100264171
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Entry
100264171 CDS
T01084
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100264171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100264171
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100264171
mRNA cycle factors
Common to processing body (P body) and stress granule
100264171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Glyco_hydro_81
Piezo_THU9_anchor
DUF5611
Tri-helical
Motif
Other DBs
NCBI-GeneID:
100264171
NCBI-ProteinID:
XP_010653966
LinkDB
All DBs
Position
8:complement(join(20372064..20373954,20374043..20374272,20374474..20374596,20374735..20375340,20379056..20379127))
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AA seq
973 aa
AA seq
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MMTIPMDNNLDIQSRERVQRLFNKNVELESKRRRSAQARISFDPNAWQQMRENYEAIILE
DNAFSEQHEIEYALWQLHYRRIEELRAHFSAALASSASNTSQSLKGSARPDRIGKIRAQF
KTFLSEATGFYHDLMLKIRAKYGLPLGYFSEDKDNQIVMSRDGNKSADIKKGMISCHRCL
IYLGDLARYKGLYGDGDSKARDYAAASSYYMEASSLWPSSGNPHHQLAILASYSGDELVT
VYRYFRSLAVDNPFSTARENLTIAFEKNRQSYSQLLGDAKASSVIAPVRMNGKGRGKAEA
RTPLKNNKKEVSSVKERASSVRETFKAFRIRFVRLNGILFTRTSLETFEEVYSMAKGNLL
ELLSSGPEEEHNFGSGAAENRLMTVRLIAILIFAVHNVNRETENQSYAEILQRSVLLQNI
FTVIFEFMGCILERCLQLHDPCASFLLPGVLVFLEWLACHPDIAVGNEVEEKQATARTFF
WNHCISFLNNLLSSGFTSSNEDQDEICFFNMSKYEEGETANRLALWEDFELRGFLPLLPA
QLILDYSRKQSFGSDGGNKDKNARVERIIAAGKSLINIVRIGQQGIYFDPKLKKFSIGVD
PQMANDFAFSGSFEVLAVNGAGQEHPEEKNMNSSTLQQKPQLYLEGEEEDEEIVFKPSAA
DKFVDVIAPKVTSHEAFGTGVDARKVDLGSPIASVSAPYDGLYLQNGSRPLTTLADGFHQ
HLQTLQPTTSKWLVEQQTSITNGLNGLSFMENGLSMNTELQESLGGLRAATPSLPFPQSV
NISAHNIYPGQVPETVIPSKFDSIMLSGASSDGLSMKPSSASSAISRKNPVSRPVRHSGP
PPGFSPVPPKNVEEPFSGLNLKNENLVVDDYSWLDGYQLPSSTQGIGFSHSINHSAQAYQ
NESKINSLNGTQNFPFPGKQVPTFQVQMENQKSWQNYHFPENLQLQLQKGNQQSIAPPEQ
HQGQSLWGGQFFV
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgatgactattccgatggataacaatttggatattcaatcaagggagcgtgttcaacgt
cttttcaacaagaatgtagagttggagagtaagcgccggaggtctgcccaagcaagaatt
tcctttgatcccaatgcatggcaacagatgcgagagaactatgaagcgattattcttgaa
gacaatgctttctctgaacagcatgaaatagagtatgctttgtggcagttgcattacagg
cgaattgaggagctacgagcacacttcagtgctgctctggcttcatcagcttcaaacact
tctcagagtttgaagggttctgcacgacctgatcgaattggaaaaattcgtgcacaattc
aaaacctttctttctgaagcaactggattttaccatgatctaatgttgaagattagagca
aagtatggtctacctctgggttatttctccgaagataaggacaatcagattgtcatgtct
agagatgggaataaatctgctgacataaagaaaggcatgatttcctgccaccgttgtctg
atttacctgggtgaccttgcgcgttataaaggtttatatggtgatggtgattctaaagct
agagactatgcagcagcatctagttattatatggaagcttcttcactctggccttcaagt
ggcaacccacatcatcagcttgctatattggcttcctattcgggtgatgaattggtgact
gtttaccgctattttcggagtctggcagttgataatcctttctcaactgcaagagaaaac
ttgactattgcatttgagaagaaccgtcagagttattcccagctgcttggagatgccaaa
gcgtcttcagtgattgcaccagtgcgaatgaatgggaaaggaaggggaaaagctgaagca
aggactcccttgaaaaataataaaaaagaagtaagtagtgtcaaggaaagagcatccagt
gtacgtgaaacttttaaggcattccggatccgatttgtccgactaaatggcatccttttc
acacgcacaagcttggaaacatttgaagaagtttactccatggctaaaggcaatcttcta
gagcttctatcttctggacctgaagaggagcacaattttggttctggtgccgctgaaaat
agacttatgactgtcagacttatagccattctgatattcgcagttcacaatgtgaatagg
gaaactgaaaatcagtcctatgcagaaatcttacaacgttcagttctacttcagaatata
tttactgttatctttgagtttatgggttgcattcttgagaggtgcctacagttgcatgat
ccttgtgctagcttcctattgcctggtgtgcttgtgtttttggagtggttagcctgtcat
ccagatattgcagttgggaacgaagtggaggagaaacaagctactgctagaacattcttt
tggaaccattgtatttcgttcttgaacaatctcctgtcgagtgggttcacgtccagtaat
gaggatcaggatgaaatttgtttcttcaatatgagtaagtatgaagaaggtgagactgcc
aaccggcttgcattgtgggaggactttgaattaagaggattcttgccacttctgcctgca
caactcattcttgattattcaagaaagcagtcttttggaagtgacggtggcaataaggat
aaaaatgctcgtgttgagaggattattgcggcgggaaagtctcttataaacattgttagg
attgggcaacagggaatatattttgatccaaagttgaagaaattttctattggagttgat
cctcaaatggccaatgactttgcattcagtggttcttttgaagtacttgcagtaaatggt
gcgggccaagaacatccagaagagaaaaatatgaactcaagcactttgcagcagaagcca
caattatacctggaaggagaagaagaggatgaggaaattgtcttcaaaccatcagctgct
gacaagtttgttgatgtcattgctccaaaggtaacttctcatgaggcttttgggactggt
gttgatgcccgcaaggttgacttgggaagtcctattgcatctgtttcggccccatatgat
ggtctctatttgcagaatgggtccaggcctcttactactcttgctgatggtttccaccaa
catttgcaaacattgcaaccaaccacatcaaagtggctggtggagcaacaaacttctatt
actaatgggttgaatggtttgagcttcatggagaatgggctttctatgaacactgagcta
caagaaagtttaggaggtttaagggctgctacaccctcacttccttttccacagtctgtc
aatatcagtgctcacaatatatatcccggtcaggtccctgaaactgtaattccatccaag
tttgattcaattatgttgtcaggagccagttctgacggtctatcaatgaagccctcatca
gcctcatcagcaatttcgagaaagaatccagtgagccgacctgttaggcattctggccct
ccacctggatttagccctgttcctcccaaaaatgtggaggagcccttctctggtttaaat
ttgaagaatgaaaatctggtggtggatgattatagctggcttgatggatatcagctgcca
tcctcaacacaaggcattgggttcagccattccatcaaccactcagcacaagcataccaa
aatgaaagtaagattaacagcttgaatgggactcaaaactttccatttcctggaaaacaa
gttcctacttttcaagtgcaaatggaaaaccagaaaagctggcagaattaccactttccc
gagaatctgcagctgcaacttcagaaaggaaatcaacagtctattgcaccaccagagcag
caccaaggacagtctctatggggaggccaattctttgtgtga
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