KEGG   Vitis vinifera (wine grape): 100264343
Entry
100264343         CDS       T01084                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X2
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03013  Nucleocytoplasmic transport
vvi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100264343
   03015 mRNA surveillance pathway
    100264343
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100264343
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     100264343
    5.6.2.5  RNA 5'-3' helicase
     100264343
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100264343
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100264343
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD Helicase_RecD UvrD-helicase NPHP3_N nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 Ribosomal_S13_N AAA_32 AAA_25 AAA
Other DBs
NCBI-GeneID: 100264343
NCBI-ProteinID: XP_002279304
UniProt: D7TTH5
LinkDB
Position
2:complement(join(7747391..7747546,7747748..7747867,7747945..7748076,7748576..7748647,7748740..7748802,7748889..7749262,7749511..7749628,7749836..7749910,7750254..7750388,7752387..7752464,7752615..7752713,7752801..7752914,7753412..7753567,7754513..7754641,7754725..7754796,7754882..7755024,7757216..7757282,7757390..7757461,7763141..7763212,7763302..7763424,7768220..7768328,7768877..7768995,7769088..7769138,7769289..7769384,7769504..7769596,7769921..7769971,7770089..7770259,7770342..7770593,7776719..7777210))
AA seq 1267 aa
MDSQPNNLYDTASQPDTGNDAYTFIEFNTQGEDFDYPDFRDPIRPSAWPTPSDSISDAAD
HQSDASPVSAAPGSATKARGAAGSSSSSQAAVDALAAGMSGLNFEETGDDDNYEYGKGDF
TEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPL
GETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDR
CFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPIALKY
EDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRL
VPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKS
TSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVF
AVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT
GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKY
KALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVK
QVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNS
FYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEK
IVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKD
YIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEH
ECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDNFGTVTSSSPSADRRSSR
GRGSYMPSGPPNGTHKPGVHPAGFPMPRVPLPPFHGGPPSQPYAIPTRGAVHGPVGAVPH
VPPPGSRGFGAGRGNAGAPIGSHLPHQQGSQQAVGNLGSTFNFPALENPNSQPSVGGPLS
QPGFVTNMPVQGPSQTFRDGFSIGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYTL
DYATQGAQAGFPGSFLNQNSQAGYTRFGTGNDFMSQDYMAHGSQGLFTQVGFNDPSQDDA
SQSHFGVANPNPLQSQGLMNPLYSQPFAHYNTQPLNLQAPQQQQQQQQQTPPQQGQSSQN
QKLHYNG
NT seq 3804 nt   +upstreamnt  +downstreamnt
atggattcacaacccaacaacctctacgacaccgcttcccaacccgacactggcaacgac
gcctacacgttcatcgaattcaacactcaaggcgaggactttgactaccctgacttccgc
gacccgattcgcccctccgcctggcccacgccttccgattcgatatccgacgcagctgac
caccagtccgatgcttctcctgtctccgccgcccccggcagcgccaccaaggcccgcggc
gccgccggcagcagcagcagcagccaggcagccgtggacgccttggctgcgggaatgagc
ggattaaactttgaggagactggggatgatgataattatgagtacggaaaaggggatttc
acggagcacgcgtgcaggtattgcggagttcagaatcctgcgtgcgtcgtgcggtgtaat
gtgccgtcgtgccgcaagtggttttgtaattcacgcgggaatacgtccggttcgcatatt
gtgaatcacctggttcgagccaaacacaaggaagtttgtcttcataaagatagtcctctt
ggagaaacaatccttgaatgctacaactgtggatgccgaaatgtgtttcttcttggattt
atatctgccaagacagaaagtgttgttgttctgctttgtagagaaccttgcctgagtgtt
aatgcattgaaggacatgaactgggacctgagtcagtggtgccctcttattgatgatagg
tgtttcttgcagtggcttgttaagatcccatccgaacaggagcaattgagggcacggcaa
atcagtgcccaacaaataaataaggtagaagaactttggaagacaaatcctgatgcttcc
ctggaagatcttgagaagcctggtgtggatgatgaaccccagcccatagccttgaaatat
gaagatgcatatcagtatcaaaatgtatttgcaccacttatcaagcttgaggcagactat
gataaaatgatgaaagaatctcaaagcaaagacaacgttacaattcgctgggatattggt
cttaacaagaagcgtattgcatatttcgtttttccaaaggaagacaatgagttgcgtctt
gtacctggtgatgagttgcggctgcgttattcaggagatgcagctcatccagcatggcag
tcggttgggcatgtgatcaagctaactgcacaagaggaggttgcacttgagcttcgtgcc
agtcagggagttcctgttgatgtgaatcatggtttcagtgttgactttgtgtggaagagt
acaagctttgatcggatgcagggggccatgaaaacttttgcagtggatgaaactagtgtc
agtggatacatttaccatcacttgttgggtcatgaagttgaggttcagatggttcgaaat
acgctccctcgtcgatttggcgcaccaggccttccagagctcaatgcttctcaagttttt
gctgtaaagagtgtacttcaaaagccaataagtttgattcaaggtccacctggcactggg
aaaactgtaacttcagcagcaattgtatatcacatggctaaacaaggccaggggcaggtt
ttggtttgtgctccaagtaatgtggctgtagaccaactagctgaaaagataagtgccact
gggttaaaggtcgttaggctctgtgcaaaatcgagggaagctgttagttctcctgttgag
catttaacccttcattatcaggttcgacatcttgatacgtcggaaaagagtgagcttcat
aagctacagcaactgaaggatgaacaaggggagttgtctagcagtgatgagaaaaaatac
aaagctctgaagcgggcgaccgagagggagatatctcaaagtgctgatgtcatttgttgc
acatgtgttggtgctggggatcctcggttggccaattttagattccgtcaggtgcttatt
gatgagtctactcaggctactgaacctgagtgcctcattcctttggttcttggtgtgaag
caggttgtccttgttggtgaccattgccagcttggtccagtcatcatgtgtaagaaagct
gcacgggctgggctagctcagtctctgtttgagcgtcttgtgcttctgggtgtgaaacca
attagattgcaggttcaataccgtatgcacccatccctgtcagaatttccttccaatagc
ttctatgaaggtacactccaaaatggagtgaccatcaatgaaaggcaatcgtctggcatt
gattttccttggcctgtgccaaatcgacctatgttcttttatgtccagatgggacaagag
gagatcagtgctagcggaacatcctatctgaataggactgaagctgcaaatgttgaaaaa
attgtaactacttttttaagaagtggtgtagttcccagtcagattggggtgataacacca
tatgagggacagagagcatatattgtgaattatatgtcgagaaatggtgctttaaggcaa
caactttataaagaaattgaggttgcgagtgtagattcattccagggaagggaaaaagat
tacattattttgtcttgtgtgaggagtaatgagcatcagggcattgggttccttaatgat
cctcgcaggcttaatgttgcactaacacgtgctcgttatggtattgtcatcctgggaaat
cctaaagttcttagtaaacagccgctatggaatagcttgttgacacactacaaggagcat
gagtgcttggttgaaggtcctctgaataacctgaagcagagtatggttcaatttcaaaag
ccaaaaaagatctacaatgatcgtcgacttttcttcggaggtggccctgggatagtgcct
aatgacaattttggaactgttacttcgtcaagccccagtgctgatagaagaagcagtcgt
ggcaggggttcatatatgccatctggcccacccaatggtactcataaacctggagtgcat
ccggctgggttcccaatgcctcgtgtcccccttcctccatttcatggtggtcccccatct
caaccctatgccattccaactcgtggagctgtacatggacctgttggagctgttcctcat
gtccctccaccaggaagccgggggtttggtgctgggcgtggcaatgctggtgctcctatt
ggcagtcatcttccacaccagcaaggttctcagcaagctgttgggaatcttggctctact
tttaactttcctgctctggagaatccaaatagccagccatccgtgggtggtccattatct
caacccggatttgttactaatatgccagtacaaggtccgagccaaacatttcgtgatgga
ttttctattgggggcatgtcgcaggatttcttgggtgatgattttaaaagccagggttca
catgtaccttataatgttgcagacttctccacacaggcttctcaaagtgggtataccctt
gattatgctacacaaggagcgcaggctgggtttccaggaagtttcctaaaccagaactct
caagctggatatactcgatttggtactggaaatgatttcatgtctcaggactacatggct
cacggatcacaaggtctgtttacacaggttggcttcaatgacccatcccaagatgatgcc
tcccagagccattttggtgtggccaatcccaacccccttcaatcgcagggtttgatgaat
cctctctactcccaaccctttgcccattacaacacacagccactaaatttgcaggctcca
cagcagcagcagcaacagcaacagcaaacacctccccagcagggccagagctcccaaaac
cagaaactccactacaatggttga

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