KEGG   Vitis vinifera (wine grape): 100264518
Entry
100264518         CDS       T01084                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100264518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100264518
   03012 Translation factors [BR:vvi03012]
    100264518
Enzymes [BR:vvi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100264518
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     100264518
Translation factors [BR:vvi03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    100264518
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 nSTAND3 AAA_19 ATPase Dicer_dimer PhoH AAA_16 NACHT prok_STING T2SSE
Other DBs
NCBI-GeneID: 100264518
NCBI-ProteinID: XP_002280133
LinkDB
Position
1:join(3905867..3906226,3918631..3918785,3918876..3918963,3919339..3919584,3920765..3920860,3922058..3922246,3922369..3922528,3922609..3922739,3925160..3925327,3925422..3925694,3931293..3931487,3931723..3931926,3932062..3932131,3932234..3932382,3934173..3934478,3934820..3934879,3935001..3935153,3935359..3935469,3935746..3936219)
AA seq 1195 aa
MYALQFSFTPRPKTLKPSAPPPLHILMKDRPPPSCVSRYIPPHHRLRSAVTSSASPNLNA
ASLDSTSRDHQGTLLNPRNTSLPHSQPQKLQQKDNSLYDFLYEEVSEEGSDREIESSSHG
GASAPDTIDEWKWKFTMLLRNKDKQELVSREKKDRRDFEQIAILASRMGLYSHLYVKVVV
FSKVPLPNYRFDLDDRRPQREVILPLGLDRRVEAHLEEYLSQKFTTNENFQDIAFSRSSS
TSSIATDEGLFEQPEPLAVSRSVIEKIVWRRSLQLRNQQQAWQESTEGRKMLEFRGSLPA
SKEKDALLTAISGNQVVIVSGETGCGKTTQIPQFILESEIESVRGAVCSIICTQPRRISA
MSVSERVAAERGEKLGESVGYKVRLEGMKGKDTCLLFCTTGILLRRLLVDRNLKGVTHVI
VDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPVVHIPGFTYP
IRTYFLENILEMTGYRLTPYNQVDDYGQEKMWKMNKQAPRKRKSQLAPVVEDALRATDFK
DYSPQTQESLSCWNPDCIGFNLIENLLCHICENECPGAVLVFMTGWDDISSLKDKLQAHP
ILGDSDQVLLLTCHGSMASAEQRLIFDEPRDGVRKIVLATNIAETSITINDVVFVVDCGK
AKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGKCYHLYPRCVYDAFADYQLPEI
LRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDENENLTVLGR
HLTMLPMEPKLGKMLILGAVFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKAQFSHD
YSDHLALVRAYEGWKDAEKDQIGYEYCWKNFLSAQSMKAIDSLRKEFFSLLKDTDLVDGN
MATYNAWSYDEHLIRAVICCGLYPGICSVVQNEKSFSLKTMEDGQVLLHSNSVNARECKI
PYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGDILRGDGDGHLKMLGGYLEFFMKPAI
AEMYQSLRRELDELIQNKLLNPRMGIHMYHELLSAVRLLISEDQCDGRFVFSHQVGRQVV
KPSKTSVTVMPKALVSRTESGPGGDNSKSQLQTLLTRAGYAAPTYKTKQLKNNQFRSTVE
FNGMQIMGQPCNNKKFAEKDAAAEALQLLMGGTQSGHEYIDHMSMLLKKSKKDHK
NT seq 3588 nt   +upstreamnt  +downstreamnt
atgtacgctctccaattttccttcactccccgccccaaaaccctaaaaccctccgcacct
ccaccacttcacatcctcatgaaggaccgcccgcctccctcatgcgtttcccgctatatc
cctcctcatcatcgtctgcgctccgccgtcacctcctctgcctcccccaatctcaacgcc
gcttctcttgactccacgtctcgggatcatcaaggcacgcttctgaaccctaggaacact
tctcttcctcactcccaacctcagaagctccaacagaaggataattcactctatgatttc
ctgtacgaggaggtgtctgaggaaggctctgatcgcgaaattgagtcgtcgtcgcatggg
ggtgcttcagcccctgataccattgatgagtggaagtggaagtttactatgcttttacgc
aacaaagacaaacaagagttggtgtcaagggagaaaaaggacaggcgtgatttcgagcaa
atagctattttggcaagcagaatgggtttgtatagccatctatatgtaaaagttgttgtc
tttagtaaggttccactgccaaactacagatttgatctagatgacaggcgcccacagagg
gaggtaattctacctcttggtttggatagaagagtggaagcccatcttgaggagtacctt
tctcaaaagtttacgacaaatgaaaactttcaagatattgccttctctagatcaagtagt
actagtagcattgctactgatgaagggctttttgagcaaccagagccacttgcagttagt
agatctgtcattgagaaaattgtttggcggaggagtttgcaactgcggaatcagcaacaa
gcatggcaggaatctacagaaggtagaaaaatgctggaatttcgtggaagtctccctgct
tccaaagagaaggatgcattactaacagccatttcaggaaatcaggtggttattgtctca
ggtgaaactggttgtggcaagaccactcaaattccccaattcatcttagaatctgagatt
gaatctgttcgtggagctgtatgtagtattatatgtacccagcctagaagaatatctgcc
atgtctgtttctgaaagagttgctgcagaaagaggggagaaattgggtgaatccgttggg
tataaggtccggctagagggcatgaaaggaaaggatacttgccttctattttgcaccaca
ggcatcttgttgagaagattactggttgataggaatttgaagggcgtaactcatgttatt
gttgatgaaattcatgagcgtggaatgaatgaagattttctgcttattgtcctgaaggat
ctccttcctcgccggccagaactgaggttgattttgatgagtgcaaccttagatgcagaa
cttttctcatcctactttgatggggctccagttgtccatatcccgggttttacataccca
attagaacgtatttcctggaaaatattctggaaatgacaggatacagattgactccgtac
aatcaagttgatgattatggtcaggaaaagatgtggaaaatgaacaaacaagctccaaga
aagaggaagagccaacttgctcctgtagtcgaggatgcactcagagctactgatttcaag
gattatagcccacaaactcaggaatctttgtcctgttggaatcctgactgcattggtttt
aacctcatagaaaaccttttatgccatatatgtgagaatgaatgtcctggtgctgtttta
gtctttatgactgggtgggatgacataagttctctgaaagataagctccaagctcatccc
atattgggagattcagaccaagttttgttgctcacatgccatggttctatggctagtgca
gagcagcggttaatatttgatgagcctcgagatggggtaaggaaaatagtgctagccacg
aatattgctgagacaagtatcacaattaatgatgtggtttttgttgttgactgtggaaaa
gcaaaagagacatcatatgatgcactgaataacactccgtgtttgcttccttcctggatc
tctaaggtttctgctcaacagagaagaggaagagctggccgtgttcaaccaggaaaatgt
taccatctctatcctcgatgtgtatatgatgcttttgcagattatcaattgcctgaaatt
ttgaggacacctttacagtccctttgcctgcaaatcaaaagtttaaaacttggaagtatt
tctgagttcctatctagggctttgcagtctccagagttgctagcggttcaaaatgctatt
gaatatttaaaaatcattggggctttagacgagaatgaaaatttgactgttttaggccgc
cacttgacaatgcttccaatggagcctaaacttggaaagatgcttatactgggggctgtc
ttcaattgcctagatccaatactaaccatcgttgctggacttagtgttagagatccattc
ttaacaccattggacaagaaggatcttgcagaggctgcaaaagctcaattttctcatgac
tacagtgaccatcttgcacttgttcgggcttatgagggctggaaagatgctgaaaaggac
caaattggatatgaatactgctggaaaaattttctttctgcacaatcaatgaaagctatt
gattcacttcggaaggagttcttctctttgctaaaggatactgacctggttgatggcaac
atggccacctacaatgcatggagctatgatgagcatctcattcgagcagttatttgctgt
ggcctgtatcctggaatttgctctgttgtgcaaaatgaaaagtcattctcattgaaaaca
atggaggatggtcaagtgctcttgcattcgaattcagtcaatgctcgagaatgtaaaatt
ccatatccatggctagttttcaatgagaagataaaagtaaattctgtttttctccgggat
tcaacagctgtgtctgattcagtgcttcttctatttgggggcgacatcttgagaggggat
ggtgatgggcacttgaaaatgttgggagggtacttggaattcttcatgaaacctgctata
gcagaaatgtatcaaagcttaaggagagaacttgatgagctaattcagaataaactactg
aatcccagaatgggcatacacatgtatcatgagctcctttctgcagtgcgactgttgatc
tcggaggaccaatgtgatggccgatttgtgtttagccaccaggttggccgccaggtcgta
aagccctcaaaaacatctgttacagtgatgccaaaagccttggtttcaaggactgaaagt
ggtcctgggggtgataattccaagagtcagctccagacgctgctcaccagagcaggatat
gctgcacctacttacaagacaaagcaattgaaaaacaatcagttccgatccactgtagag
ttcaacggaatgcagatcatggggcagccttgtaacaacaagaagtttgcagaaaaggat
gcggcagcggaggctctgcagttgctaatgggtgggacccagtcaggccacgaatatatt
gaccacatgtcaatgttgctgaagaagagcaagaaggatcataagtaa

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