Vitis vinifera (wine grape): 100265014
Help
Entry
100265014 CDS
T01084
Name
(RefSeq) vacuolar sorting protein 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100265014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vvi04131
]
100265014
Membrane trafficking [BR:
vvi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100265014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
AlaDh_PNT_N
zf-HC5HC2H_2
DUF2175
Motif
Other DBs
NCBI-GeneID:
100265014
NCBI-ProteinID:
XP_002267514
UniProt:
F6GWW4
LinkDB
All DBs
Position
4:join(19782146..19782581,19783523..19783734,19784705..19784836,19784937..19785080,19786095..19786207,19786766..19787201,19787293..19787622,19788552..19788773,19788966..19789208,19789950..19790402,19798921..19799019,19799445..19799645)
Genome browser
AA seq
1006 aa
AA seq
DB search
MVHSAYDSFELLNNCPTRIETIESYGAKLFLGCSDGSLRIYGPESFSFDRSPPSDPNALE
LRKEPYVLERTVTGFSKKPLVAMEVSGTRDLLLSLSESIAFHRLPNLETIAVITKAKGAN
VYSWDDRRGFLSFARQKRVCIFRHDGGRGFVEVKEFGVPDFVKSMSWCGENICLGIRREY
MILNATNGALSEIFPSGRIAPPLVVSLPSGELLLGKDNIGVFVDQNGKLLQEGRICWSEA
PKVVVIQKPYAIALLQRHVEIRSLRVPYPLIQTVVLRNMCHLHQSNNAILVAVDNSVYGL
FPVPLGAQIVQLTASGDFEEALALCKMLPPEDASLRAAKEGSIHIRYAHYLFENGSYEEA
MDQFLASQVDITYVLSLYPSIVLPKSVVLPEPEKLMENVWDASHLSRGSSGVSDDMESSP
PPQLLESEENAVLESKKMSHNTLMALIKFLQKKRYNIIEKATAERTEEVVLDAVGDNFAS
YDSTRSKKSNKGRVNIAISSGARETAAILDTALLQALLLTGQSSAALELLKSLNYCDMKI
CEEILQKRNHHTALLELYKCNGMHHDALKLLHQLVEDSKSDQPQAELSQKFKPEMIIEYL
KPLCATEPMLVLEFSMLVLESCPSQTIDLFLSGNIPADLVNSYLKQHAPNMQAMYLELML
AMNEHGISGNLQNEMVQIYLSEVLEWHADLSAQGKWDEKAYSPTRKKLLSALESISGYNP
EGLLKRLPPDALYEERAILLGKMNLHEFALSLYVHKLHVPELALSYCDRVYESVLHQTSG
KTSGNIYLTLLQIYLNPRRTTKNFEKRITSLVSSQNTSIPKVSSGTSVKAKGGRLGKKIA
EIEGAEDMRVSLSSTDSGRSDGDADEPSEEGGSSIMLDEVLDLLSRRWDRIHGAQALKLL
PRETKLQNLLPFLGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELHNQRKTVVRISSDSM
CSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVVKSSPLRKR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggtacacagtgcctatgattccttcgagctcctcaataattgtccgaccaggatcgag
accatcgaatcgtacggggccaagctcttcctaggatgcagcgacggatctctccgaatc
tacggtccagaatccttcagcttcgacagatcgccgccctccgatcccaatgccttagag
ctgcgaaaggaaccatatgtactagagagaaccgtgactgggttctcgaagaagcccttg
gtggcaatggaagtctcgggtacgagagaccttcttttgtcgctctcggaatcgatcgca
tttcaccggcttcccaatttagagacaattgccgtgatcaccaaggcaaaaggcgctaat
gtgtattcgtgggacgatcggagagggttcttgtcctttgccaggcaaaagagagtctgt
attttcaggcacgatgggggccggggatttgtggaggttaaagaatttggtgttccagat
tttgtgaagtcaatgtcttggtgtggtgaaaatatatgtttggggattagaagagaatat
atgatattgaatgccacaaacggtgcattgtctgagatatttccttctgggaggattgcc
ccacctttagtggtctcccttccttctggagaacttcttcttgggaaggacaacattggg
gtttttgtggaccaaaatgggaagcttcttcaagagggcaggatttgttggtctgaggcc
cctaaagttgttgtcattcagaagccatatgcaatagctctcttacagagacatgttgag
atacggtccctccgagttccatatccattgatacaaactgtggttctccgcaatatgtgt
catcttcaccagagtaacaatgccatacttgttgcagtagacaactctgtttatgggcta
ttccctgttcctctaggagcacagattgtacaactaacagcgtctggtgattttgaggaa
gctttggctttgtgtaaaatgcttccaccagaagatgcaagcctccgagctgcaaaggag
gggtcaattcatataaggtatgcacactatctgtttgaaaatgggagctatgaagaggcc
atggatcagtttttggcatctcaagtagatatcacctatgtgctttctttgtatccatcc
attgttcttcccaaatcagttgtgcttcctgagcctgagaagctgatggagaatgtttgg
gatgcttcacatctctcaagaggttcatctggtgtctcagatgatatggaatcctcacct
cctccacagctattggaatctgaagaaaatgcagtacttgagtcaaagaaaatgagccac
aacactctcatggctcttatcaagttcttgcaaaagaagagatacaatataattgagaaa
gccactgctgagagaacggaggaggttgttttagatgctgttggagataattttgcatct
tatgattcaactaggtctaaaaaatcaaacaaggggcgtgttaacattgccatcagctca
ggtgctagggagacagcagcaatactagatacagcactactccaagccctgcttcttact
ggacagtcttcagctgctttggaattactgaaaagtcttaactattgcgatatgaaaata
tgtgaagagattcttcagaaaagaaatcatcacactgctctgttagaactttacaagtgc
aatggaatgcatcatgatgctctcaaacttttgcatcaattggtagaagattcaaagtca
gaccaaccacaagctgaactaagccaaaaattcaagcctgaaatgataattgaatatctc
aagcctctgtgtgcaaccgaacctatgcttgtcttggagttctcaatgcttgttcttgaa
agctgtccatcacaaactattgatctctttttgtctggaaatattccggcggacttggtc
aactcttacttaaaacagcatgctccaaacatgcaagccatgtacttagagcttatgctt
gccatgaatgaacatgggatctctggaaatctgcagaatgagatggtgcaaatctatcta
tcggaagtacttgaatggcatgcagatttatctgctcaggggaaatgggacgagaaagct
tattcccctacaaggaagaaattattgtctgctttggaaagtatctcaggttataaccct
gagggtttgttgaagcgtcttcccccagatgctttatatgaagagcgtgcaattttgctg
ggcaaaatgaacctgcatgagtttgccttatctctgtatgtccataagcttcatgttcct
gaactggcactgtcctattgtgatcgtgtatatgagtccgtacttcatcaaacttcagga
aaaacttctggcaatatatacctcactcttttgcaaatctatttgaaccctcgaaggaca
acaaagaactttgaaaagagaattactagtctagtatcatctcagaatacaagcattccg
aaggtcagttcaggaacatcagttaaagctaaaggaggtcgcttgggtaagaaaattgct
gagattgagggtgcagaagacatgcgagttagtctcagcagcactgatagcgggaggagt
gatggtgatgcagatgaacctagtgaggaaggaggttctagcatcatgcttgatgaggtc
cttgatctgttgagccgaaggtgggatagaatccatggagcacaggccctcaaactctta
ccgagggaaactaaattgcagaacttgcttccatttcttgggcccctcctgaggaaatcc
agtgaagcatacaggaatctatcagtgatcaagagtcttagacagagtgagaatttgcag
gtaaaggatgaactccacaaccagaggaaaacggttgtgaggatcagcagtgacagtatg
tgctctctctgcaacaagaagatagggacaagtgttttcgctgtctaccccaatgggaag
acactggtgcatttcgtttgctttagagactcacagagtatgaaggctgtggttaaaagc
tctccactgagaaagcgttaa
DBGET
integrated database retrieval system
