Vitis vinifera (wine grape): 100265039
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Entry
100265039 CDS
T01084
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100265039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100265039
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100265039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
100265039
NCBI-ProteinID:
XP_010661352
UniProt:
D7SLU6
LinkDB
All DBs
Position
15:join(16173276..16174947,16175486..16175576,16176059..16176137,16176520..16176642,16177110..16177187,16179029..16179132,16181378..16181465,16181552..16181650,16182666..16182758)
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AA seq
808 aa
AA seq
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MSGFNLPTSSAPPSSSSSSSTSLFPSFPSASASSSPLFSGISSSSSSSIFPFSNPSSSSS
PSPFSFGSTPSAASSLFPSVSPSTEFSLSSSPFQSSSTSSNPSSSSSSFSSQFSAFGSSS
SSSSPFGGVGSFASSAQGTFGFGFGSAPAASLAPSSGSTLFGASSISSTGSSLFGAASLS
STGSTLFGAPSVSSSPSPAFSTSAPFGSSSSSSAVISSTTTPSTANTLFGASSASASTAS
ALFGASSALVSTATANPLFGASSASVSTATASPLFGASSASVSAATPAFSSPLFGASSPA
PPFGPSSSSSTSASTAPSVPNFFSSSSASNSSSPAPAFSFLKGTTSSTTTSVSSASSLTS
STTSSAGFSFGTPSSSDFQASFSLGNAASTTTSAAPASSASAATPAKPAPFGFGMSSPSL
FSTVTTTTSSSTPAAATTPAASAASTSAFSVFGVSSSASTVASPAFGVSSSSSTQATTPA
LPAFGVGSSSSAIPSTIAAASTTSSSTAAGSFPGFGVTSAGASSGTTSSFPSFSLPTKSS
APASSSQAQTTTASPLFGVPPSTAVAVTSSSTTAVQTSSSLVVASSSGTNSTVTTAVAPA
PKMPSEITGKTVEEIIKEWNTELQERTGKFRKQATAIAEWDKKILQNRDVLLRLEIEVAK
VVETQAQLERQLELIETHQQEVDKALLSIEEEAERIYKDERGLLLDDEAASTRDAMYEQA
EFIEREMEQMTEQIKSIIQTLNTNQGGELDVMDGMTPLDVIVRILNNQLSSLMWIDEKAQ
EFNSRIQKLASQGSTSEHGSMGPKFWMS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttcaacctccccactagctctgcccctccttcttcttcatcatcatcatca
acctctttgtttccttcatttccttctgcttcagcttcttcatcgcctctcttctctgga
atttcttcctcttcttcttcctcaattttccccttctcaaacccttcttcttcgtcttct
ccatctccattctctttcggatcaaccccttctgctgcgtcctctctgttcccttctgtg
tcaccatccactgaattctcactgagttcttccccatttcaatcttcttccacttcttca
aaccctagctcctcctcttcttcattttcttcccaattctccgcctttggttcatcttcg
tcctcctcttcccctttcggtggggtaggatcattcgcttcttccgcccaaggtacgttc
ggcttcgggttcggatccgctccagcggcatcattggcaccgagttctgggtcgaccctg
tttggggcgtcttcgatctcatccactggttcgtcactttttggggcggcttcgctctca
tccaccggttcgacattgttcggggcgccttcggtctcatcgagtccttcccctgcattt
tctacttcagccccttttgggtcttcttcctcttcttcggctgtgatttcttctactaca
actccttccactgctaacaccttgtttggggcatcttcggcttcggcttctaccgctagt
gccttgtttggggcttcttcagctttggtgtctactgctactgctaatccattgtttggg
gcttcttcagcttcggtttctactgctactgctagtccattgtttggggcttcttcggct
tcggtttctgctgctacccctgccttttcgtctccgttgtttggggcttcttctcctgca
cctccctttggaccttcttcttcgtcttctacttcggcttcaactgctccttctgtcccc
aattttttttcttccagttcagcttccaattcgagctctccagcacctgcattttcgttt
ttgaaggggactacgagttctacgactacttctgtatcatccgcatcctctttgacatcc
tctaccacaagttctgcgggtttctcatttggaacaccatcctcttcggattttcaggcc
tcttttagtctcggaaatgcagcttctaccaccactagtgccgccccagcatcctcggct
tctgctgcaacaccggcgaagcctgctccttttgggtttggaatgtcatcaccttcatta
ttttcgacagtgactactactactagttcttcgactccggccgccgccacaaccccagct
gcttctgcagcttccacctcggcgttttctgtctttggggtgagttcttcagcttcaact
gttgcttcacctgcttttggtgtgagttcttcatcatcaactcaggcaacaactccagca
ttgcctgcttttggggtgggttcttcatcttcagctattccttcaaccatagcagcagca
agcacaactagttcctcgacagcggcaggttcttttcctggttttggtgttacaagcgca
ggtgcttcctcggggactactagttcttttccgagtttttcgttgccgactaaatcatca
gcccctgcttcatcttcacaagcacaaaccacaactgcttctccactttttggtgttcct
ccttccactgctgtagctgtaacaagttccagtactactgctgttcagacatcatcatcc
ctggttgtagcttctagtagtgggacaaactcaactgtcacaacagctgtagcacctgct
ccgaaaatgccatccgagatcactgggaaaactgttgaagagatcatcaaggagtggaac
actgagctacaggaacgcactggaaaatttagaaaacaggctactgcaatagctgagtgg
gacaagaagattttgcagaatcgtgatgttcttctgagacttgagattgaagtggcgaaa
gtggttgagacccaagctcaattggagagacaacttgagttaattgagacccatcagcaa
gaggttgataaggctttgctaagtatagaagaagaagctgagcgtatttacaaggatgag
cgtggattgctccttgatgatgaggctgcatccacaagagatgcaatgtatgagcaggct
gaatttatagagagggaaatggaacaaatgacggaacagataaaatcaattattcaaaca
ctaaataccaatcagggtggagaacttgatgtgatggatgggatgactccattagatgtc
attgtacgaattttaaacaatcaactaagctctctaatgtggattgatgaaaaggctcaa
gaatttaactcgcgcattcagaagcttgccagtcaaggttctacttcagagcatggatca
atgggtccaaaattctggatgagttaa
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