Vitis vinifera (wine grape): 100265326
Help
Entry
100265326 CDS
T01084
Name
(RefSeq) polygalacturonase isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi00040
Pentose and glucuronate interconversions
vvi01100
Metabolic pathways
Module
vvi_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100265326
Enzymes [BR:
vvi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
100265326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
100265326
NCBI-ProteinID:
XP_003633562
LinkDB
All DBs
Position
13:complement(join(27951746..27951895,27951984..27952100,27952810..27952918,27953157..27953238,27953322..27953529,27953750..27953770,27953843..27954010,27954102..27954233,27954317..27954688))
Genome browser
AA seq
452 aa
AA seq
DB search
MFTLITPLYQALISHKMLPQSLFLSLFFTLISSPSCFSSFQDDNLANFLDGTPGPSAYPP
FFGTIDKDRAVDFEASFANLQMEYEAEIVDSTRYDQLGTPATSLGEVNVDDFGAKGDGVT
DDTEAFKTAWEETCSSNTAVLVVPQNKKYHVKPITFSGPCKSDSVKLKILGTIKASEDPS
DYAKDRSRWLLFYNIKNFQVEGQGTIDGNGKIWWKNSCKINITQPCTNAPTAVSFVQCDN
LKVYGLNVQDAQQMHVSFEESMNVQASNIMVTSSEESPNTDGIHVTRSENVQIIKTVIKT
GDDCISIVNGSTNIEAIDVTCGPGHGISIGSLGKGKSEARVSNVMVNTAKLIGTTNGVRI
KTWQGGSGYAENIVFQDIKMENVSNPIIIDQNYCDQETPCNEQNSAVQIRNIVYKNITGT
SATKMTIIFNCSKTLPCQGIVQKDINLVYKEN
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgttcactctcattacaccattataccaagctttgatttctcacaaaatgcttccacaa
agtctttttctctcacttttcttcactttgatctcttctccttcatgttttagcagtttc
caggatgacaatcttgctaattttcttgatggaacacctggcccaagtgcctacccccca
ttttttggcaccattgataaggaccgggccgttgactttgaggcaagtttcgcgaacctg
cagatggagtacgaagctgaaatcgtcgattccacaaggtatgatcagctgggtactcct
gcaacttcactgggagaggtaaatgtcgatgattttggagctaaaggtgatggagtaaca
gatgatactgaggcattcaagacagcttgggaggagacttgttcttccaacacagctgtg
cttgttgtccctcagaataagaagtatcatgttaagccaattacattttcaggcccttgc
aaatctgattctgtaaagttgaagatcctgggaacgatcaaggcttctgaagatccttca
gactatgcgaaggataggagccgatggctcttgttctacaacataaaaaacttccaagta
gaaggtcaaggaaccatcgatggcaatggaaagatatggtggaaaaactcatgcaaaatc
aacattactcaaccttgcaccaatgcaccaacagcggtatccttcgtccaatgcgacaac
ttgaaagtgtatggcctcaacgtacaggatgcccagcaaatgcatgttagctttgaggaa
tctatgaatgttcaagcttctaatatcatggtgacttcatcagaggagagccctaacact
gatggaattcatgtgacacggtccgaaaatgttcagatcattaaaactgtaatcaaaaca
ggtgatgactgcatttccattgtaaatggatcaacaaacattgaagccatagatgtaacc
tgtggaccaggtcatggaatcagtattgggagcttaggaaaagggaagtcagaagctcgt
gtttcaaatgtgatggtgaatacggcaaaactcataggaaccactaatggagtgagaata
aagacttggcagggaggatcagggtatgctgaaaacatagtatttcaagacattaagatg
gaaaatgtgagcaaccccataatcatagaccaaaactactgtgatcaagaaactccatgc
aatgaacagaattcagctgtccaaataagaaacatagtctacaagaacatcacaggcaca
agtgcaacaaaaatgaccataatattcaactgcagcaagaccttaccttgccaaggcatt
gtgcagaaggatataaatctagtatacaaagagaactga
DBGET
integrated database retrieval system
