KEGG   Vitis vinifera (wine grape): 100265580
Entry
100265580         CDS       T01084                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100265580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100265580
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     100265580
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 100265580
NCBI-ProteinID: XP_002269553
UniProt: A0ABY9CB03
LinkDB
Position
8:complement(join(2103610..2104266,2105721..2105822,2105929..2106291,2114029..2114198,2114289..2114376,2116616..2116661,2116797..2116879,2122472..2122577,2136223..2136273,2136377..2136456,2141539..2141622,2141701..2141859,2142115..2142270,2151787..2152437))
AA seq 931 aa
MDLDPTQGQSLNLDLTKSTASLSSSISRLSRSSRAVPSDKDFHFFHNFEEFRAPVKEIAA
ASQAMLQMIGSSADIWGREMAYPEDADEGYEWVVDRNDEAYDRFDAAAEEFRGLRLKQEQ
SRIDSGDGFQLVCGRKKKWGQSEMGQDSTVVAHSNVALAVKDKRTVGPAARPRVPFHIPT
IPRPQDEFNILVNNSNQPFQHVWLQRSDDGLRFIHPLEKLSLLDFVDKNIGDLMPVMPPS
IEDTPFKLVEEVRDLKELAAKLCCVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVDT
LKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDTGQASRVLKLERN
SLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYDLMRTQLLSMAEL
ENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQLAIVAGLFEWRDV
VARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNLGPVVSIIRHSILN
AAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADARAESFDTDNVINGG
KTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEKDSFIPEVARETPA
SSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRKLNSDPKGKEDIKL
EQIKSSVNLPFHSFSGGNREELSKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEE
NSGSDESVNGNSGAANEQLEGKEDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETR
KARRVEKSQESNGLLQVKPFDYEAARKQVRFGEDPEESRGKEGRGGLVDSVSKKRSLGKG
RVQGEDETGDYAQGRRRQAFPATGNRSVTFR
NT seq 2796 nt   +upstreamnt  +downstreamnt
atggatttggatcccactcaaggtcaatcactgaacctggaccttaccaaatccactgct
tctttatcttcttcaatttcaaggctctcgcgttcttcccgggctgtgccttcggacaaa
gacttccatttcttccacaactttgaagagttcagagcacccgtgaaggaaatcgcagcg
gcgtcgcaggcgatgctccagatgattgggtcttctgcggatatttggggcagggagatg
gcgtatcctgaagacgccgacgaggggtacgaatgggtggtggacaggaacgatgaggcc
tacgaccggttcgatgcagcggcggaggagtttagggggctgaggctgaagcaagagcaa
agccgaattgattccggggatgggtttcagttggtgtgtgggaggaagaagaaatggggg
cagtcggagatggggcaagattcaactgtggtagcacattcaaatgtggcccttgcggtg
aaggataagagaacggttggcccggcagcgaggccgagggtgccgtttcacataccgaca
attccacggcctcaggatgaatttaatatattggtgaataattcgaaccagccattccag
catgtttggttgcagaggagtgacgacggcttgcggttcatacatcccctggagaagctc
tctctgctggattttgtcgacaaaaatattggggatcttatgcctgtaatgccaccttct
attgaggataccccattcaagcttgttgaagaagttagggatttgaaggaactagctgct
aagttgtgctgtgtgaatgaatttgcggttgatctggaacataatcagtatcgatctttt
caagggttgacttgcttgatgcaaatctctactaggactgaggattttgttgttgataca
ctaaagcttcgcattcatgttggtccatatttgagggaggtcttcaaagatccaacaaag
aaaaaggttatgcacggggcagatcgggatatcatttggcttcaacgggattttggcata
tacatctgcaacatgtttgataccggacaggcctcaagggtactgaaattggaaagaaat
agtctggagcaccttctgcaccactattgtggagtcactgctaacaaagaatatcagaat
ggagattggagattacgtcctctcccccatgaaatgctcagatatgctagggaagataca
cactatttactgcatatatatgatttaatgagaacccaattgctctcaatggctgagctg
gagaattctaatgctcttttacttgaggtgtacaaacgcagttttgatatttgcatgcag
ctttatgagaaggagcttttaactgatagttcatatctctatacatatggattgcagggg
gctcatttcaatgctcagcagcttgctatagttgcaggcctttttgaatggcgagatgtg
gttgctcgtgctgaggatgaaagtactggttatatattgcccaacaaaactcttcttgaa
atcgccaaacagatgcctgtcacaaccagcaagttacgacgattgctgaaatcaaagcac
ccttatgttgagcgcaatcttggtcctgttgttagcatcataaggcattctatcctaaat
gctgctgcatttgaagctgctgctcaacatctgaaggagggtcacattggaacagcatct
gaagacaatacagttgataccactggatttgaagccttgccttctgaatctcctacaagc
ataagggctgcggatgctagagcagaaagttttgatactgacaatgtaataaatggtggc
aagactgataaactacaaacttttgtgagtgctaaagaatatcatatggagcctggaagc
actatagatggacctggcagcaagggacaaggaggttcttctgagcctcctggtgaaagt
aaagaagtgaaggatgaaaaggatagtttcattccagaagttgcaagagaaacccctgcc
agttcaggccagagtagagacacagacactcatacaagtgtgtcgcagagtgagaaggtt
actgaagtaacagttcagttgctgaagaagccaaaccgcgcctttggatcactactaggg
aattcagcctcaaagagaaagctaaattctgatccaaaaggaaaggaagacatcaagttg
gagcagataaaatcttcagtgaaccttccattccattcattttcaggcgggaacagggag
gaactgtcaaaactggatacagaagagcatactaaagtcctagaaactcaaggttctgaa
gaacctcttgctgtgccagcctccagaaatgatttagaagagataataatgtttgaagaa
aactcagggtctgatgaatcagtaaatggcaactcgggagctgcaaatgaacagttagaa
ggcaaggaggataatcctaaggggtctggcttggaaatggatgagggaaatgagcctatg
tctctcactgacttatcctccggttttcagaagtgctctcagtcattgaatgaaaccagg
aaagcaaggcgagttgaaaaatctcaggagtccaatggccttttgcaggtgaagccattt
gactatgaagcagcgaggaaacaagtgagatttggtgaggatccagaggaatcaagaggc
aaagaaggtcgagggggtctggtagattcagtgagcaagaaaagaagcttgggtaaaggt
agagtccagggagaagatgagactggagattacgcacaaggtagacggcgtcaggctttt
ccggcaactgggaaccgaagtgtaacttttcgctga

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