KEGG   Vitis vinifera (wine grape): 100265692
Entry
100265692         CDS       T01084                                 
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100265692
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100265692
   03016 Transfer RNA biogenesis [BR:vvi03016]
    100265692
Enzymes [BR:vvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     100265692
Messenger RNA biogenesis [BR:vvi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     100265692
Transfer RNA biogenesis [BR:vvi03016]
 Prokaryotic type
  tRNA degradation factors
   100265692
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 OB_RRP5_4th KH_2 KH-I_KHDC4-BBP
Other DBs
NCBI-GeneID: 100265692
NCBI-ProteinID: XP_059594856
LinkDB
Position
8:complement(join(2236616..2237029,2240379..2240420,2240501..2240554,2241127..2241190,2241587..2241681,2241766..2241873,2241976..2242049,2243969..2244041,2244262..2244309,2244449..2244632,2244856..2245034,2265908..2266000,2266773..2266886,2274172..2274246,2277669..2277932,2288207..2288320,2293852..2293908,2296033..2296189,2296293..2296357,2299697..2299780,2307803..2307845,2307940..2308046,2333700..2333768,2335557..2335820))
AA seq 946 aa
MLANPSIHAPLLHTNRWRLPLSCNLHRSLRPKKAPRSSSSLLFSSKSCSFGVRALAESQA
SEINPSSVEAPPGVAQPFSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTSVCLA
DVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGF
YHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSELPISKAVAGVRVGMVGNKFIINPTT
KEMEDSELDLLVAGTDSAILMIEGYCNFLPEEKLLQAVEVGQDAVRAICNEVEALAKKYG
KPKMLDAIKLPPPELYRHVEEIAGQQLGKVLQIRNKIPRRKALISLEEEVLTILTEEGYV
SKDETLGTAETIQDLFEDEDEDEEVVVDGEVDEGDVHIKPIPRKSSPLFFSEVDVKLVFK
EVTSKFLRRRIVEGGKRSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGD
RQMAQRIDNLVDVDELKRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPS
EDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFGG
DGTPLILSDITGSEDASGDMDFKVAGTEDGITAFQMDIKVGGITLPIMKQALLQAKDGRK
QILAEMSKCSPLPAKRLSKYAPLIHIMKVKPEKINIIIGPGGKKVKSIIEETGVEAIDTQ
DDGIVKITAKDLTSLEKSKTIISSLTMVPTVGDIYRNCEIKSIAPYGVFVEIASGREGLC
HISELSPSWLAKTEDAFKVGDRLDVKLIEINDKGQLRLSRKALLPNANPEKPSLKQRTSS
KENAASQKAPDKGTTKKAVNMPKDGLGEVNVELSNDTSSNPKPVSSHTTNSAEGDALPQK
IIKRLVSSGRDEPDTNKERPKKSISKAVTSVSNKDESSLVNGEAKI
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgctagcaaaccctagcatccacgctccattgcttcacaccaatcggtggaggctccct
ctctcctgcaatctccaccgctctctccgccccaaaaaggccccacgcagttcctcttct
ctgcttttctcttcaaaatcctgcagttttggtgtcagggctttggccgaatcccaagct
tccgagatcaatccttcatcggtcgaggcgccgccgggagttgctcagcccttctcagtg
aaaattccggtcggcgatcgacacatcttagttgagacaggtcatatagggagacaagct
agtggctctgttacagtaactgatggtgaaactattgtctatacatctgtttgcttggct
gatgttcctagcgagccttctgattttttccctctttccgtaaattatcaagaacgcttc
tcggcagcaggtcggactagtgggggatttttcaaacgagaagggaggacaaaagatcat
gaggttctcatttgtagattgattgacaggcctttgcgcccaactatgcttaagggcttc
taccatgaaactcagatactatcttgggttttgagctatgatggactgcactcccctgat
tctttagcagttacggcagctggaatagcagtagctctttcagaattgccaatatcaaaa
gcagttgcaggagttcgagttggtatggtcgggaataagtttatcattaacccaacaacc
aaggagatggaggactcagagttggatttgttggtcgcagggacagatagtgcaatattg
atgatagagggttattgtaattttctcccggaagaaaagttattgcaagctgtagaagtt
gggcaggatgcagtacgggcaatttgcaatgaagtggaggctttggctaagaaatatggg
aaaccaaaaatgcttgatgcgataaagttacctcctccagagctatataggcatgttgaa
gaaattgcagggcagcagttgggtaaggtgcttcaaattaggaataaaataccgagaaga
aaggcccttatatcattggaagaagaagttttaactatacttacagaagaggggtatgta
agtaaggatgaaaccttgggaactgccgaaacaatacaggatttatttgaggatgaagat
gaggatgaagaagtggttgtggatggtgaagtagatgaaggtgatgttcacataaagcca
attccacggaaatccagtcctttgtttttttctgaggtagatgtgaagctggtatttaaa
gaagttacatccaaatttctacggagacgtattgttgagggtggcaaaagaagtgatggt
cgaaccccagatgggatacgtttaatcaactcgcaatgtggattacttcctagagcacat
ggaagtgctcttttcacacggggggaaactcagtcattagcagtggttacacttggtgat
agacaaatggcacaaaggatagacaaccttgtcgatgtagatgaattgaagaggttctat
cttcagtactcatttcctccttcatgtgttggagaggtaggacggatgggagcacccagt
agaagggaaattggtcatggtatgcttgcagagagagcacttgagccaattttgccttct
gaagatgattttccttacactatacgtgttgagagcactattactgaaagcaatggctct
tcaagcatggcatctgtttgtgggggttgcttggctttgcaagatgctggggttccagta
aaatactccattgctggaatagcaatgggtatggttttgaacacagaggaatttggtgga
gatggaaccccacttattctatctgacataactggatctgaagatgcatctggagatatg
gattttaaggttgctggaactgaagatggtataactgcatttcagatggacataaaggta
gggggaattacgttaccaattatgaagcaggcactcctacaagcaaaagatggccgaaaa
cagattcttgctgagatgtcaaaatgctcacctctacctgcaaaaagactttctaaatat
gctcccctgattcacattatgaaggtcaagccagagaaaattaacatcattattggtcct
ggtgggaagaaagtgaagagtattattgaagaaactggagtagaagctattgacacacaa
gatgatggaatagtgaaaatcactgcaaaggatttgacaagcctggagaagtctaaaacc
attattagtagcctgacaatggttccaactgttggtgatatttacaggaattgtgagatc
aaatcaatagctccttatggagtttttgttgagattgcatcaggccgtgagggactttgt
catattagtgagttgagtccaagttggctggcaaagacggaagatgcttttaaagttgga
gaccgcctcgatgttaaacttattgagataaatgataaaggacagcttcgccttagccgg
aaagcattacttcccaatgcaaatccagagaaacccagtttgaagcaacgtacaagtagt
aaggaaaatgctgcttcacagaaagctcctgataagggtacaactaaaaaggctgtgaac
atgccaaaggatggattaggagaagtgaatgtagagctgtccaatgatacaagtagcaac
ccaaaacctgtgagctcacatacaactaattcagccgaaggtgatgcactccctcagaag
attattaagagattagtcagctctggaagagatgaacctgatactaacaaagagaggcca
aagaagagcattagtaaagcagttaccagtgtctccaacaaagatgaaagtagtttagtg
aatggagaagcgaaaatctga

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