Vitis vinifera (wine grape): 100265787
Help
Entry
100265787 CDS
T01084
Name
(RefSeq) WD-40 repeat-containing protein MSI3
KO
K10752
histone-binding protein RBBP4
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03082
ATP-dependent chromatin remodeling
vvi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100265787
03083 Polycomb repressive complex
100265787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vvi03036
]
100265787
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
100265787
Histone modification proteins
HAT complexes
HATB complex
100265787
HDAC complexes
Sin3A-HDAC complex
100265787
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
100265787
PRC2.2
100265787
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
100265787
Heterochromatin formation proteins
Other heterochromatin formation proteins
100265787
Chromatin remodeling factors
NuRD complex
100265787
NuRF complex
100265787
NuRF complex (fruit fly)
100265787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
Beta-prop_EIPR1
WDR55
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WD_LRWD1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
MIOS_WD40
Beta-prop_EML
WD40_RFWD3
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
100265787
NCBI-ProteinID:
XP_002278931
UniProt:
D7U551
LinkDB
All DBs
Position
3:complement(join(1675934..1676156,1677809..1677904,1678802..1678926,1680610..1680753,1680851..1681174,1681524..1681817))
Genome browser
AA seq
401 aa
AA seq
DB search
MGEEEMSVEQVEEEFTVWKKNTPFLYDLIISHPLEWPSLTVQFLPSPPLPYALDSFSVHK
LVLGTHTSDGFPNYLMVADAFLPRNTAAPSEQNPTIPKVEITKKIHVDGEVNRARCMPQN
PDMVAAKTSGLEVYVFNCQKPPVGGEGRSCNPDLRLRGHEKEGYGLSWSSFKGGYVLSGS
NDCKVCLWDVSASAEDKVLGAMHVYEAHENVVEDVSWHLKNENLFGSVGDDCRLMIWDLR
LDKPQHSVIVHEKEVNFLSFNPYNEWILATASSDTTVGLFDMRKLNSPLHVLSSHTEEVF
QVEWDPNHETVLASSADDRRLMVWDLNRIGEEQLEGDAADGPPELLFSHGGHKAKISDFS
WNKNEPWVISSVAEDNTLQIWKMTEGIYRDEDGTQTADDHS
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagaagaaatgagtgttgagcaggtggaggaggagttcacagtgtggaagaag
aacactccatttctctacgatctcatcatctctcaccccctcgaatggccttctctcact
gttcaattcctcccatctcctccgctcccctacgccctcgactcattctccgttcacaaa
cttgtcctcgggacccacacctccgacggcttccccaactacctcatggtcgccgacgca
ttcctccccagaaacaccgccgccccatctgagcaaaaccccacgattcctaaggtggag
ataacgaagaaaatacatgtggatggagaagtaaatcgagctcggtgtatgccacaaaac
ccagatatggttgctgctaagacaagtggtttggaagtgtacgtttttaactgtcaaaag
ccgccggtggggggcgaaggacggtcttgcaatcctgatttgaggttaaggggtcatgag
aaagaagggtatgggttgtcttggagttcctttaaagggggttatgttttgagtggttca
aatgattgcaaggtatgcttatgggatgtgtctgcatctgctgaagataaagtgctaggc
gcaatgcatgtttacgaggctcatgaaaacgtggtagaagatgtgtcctggcatttgaag
aatgaaaatctatttggatcagtgggggatgattgtcgattaatgatttgggacttgcgt
ttggacaaacctcagcattctgttatagttcatgagaaagaggtgaattttctttctttc
aatccatataatgaatggattctggctacagcatcttcagacactactgttgggctgttc
gatatgcggaagctgaactcaccattgcatgttttaagcagccacacggaggaggtattc
caggtagaatgggatcccaatcatgaaactgtgttggcttcttctgctgatgaccggagg
ttgatggtttgggatcttaacaggattggggaggagcagttagaaggagatgctgcagat
ggtcctcctgagcttctcttttctcatgggggtcataaagccaagatatcagacttctcc
tggaacaaaaatgagccatgggttatttcaagtgtagctgaggacaatactcttcagatc
tggaaaatgaccgagggtatttatcgagatgaggatggcacacaaactgctgatgatcat
tcatag
DBGET
integrated database retrieval system
