Vitis vinifera (wine grape): 100266082
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Entry
100266082 CDS
T01084
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03030
DNA replication
vvi03410
Base excision repair
vvi03420
Nucleotide excision repair
vvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100266082
03410 Base excision repair
100266082
03420 Nucleotide excision repair
100266082
03430 Mismatch repair
100266082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vvi03032
]
100266082
03036 Chromosome and associated proteins [BR:
vvi03036
]
100266082
03400 DNA repair and recombination proteins [BR:
vvi03400
]
100266082
DNA replication proteins [BR:
vvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100266082
DNA Replication Termination Factors
ELG1-RFC complex
100266082
Chromosome and associated proteins [BR:
vvi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100266082
DNA repair and recombination proteins [BR:
vvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100266082
Check point factors
HRAD17(Rad24)-RFC complex
100266082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_22
AAA_assoc_2
AAA_11
AAA_14
DNAX_ATPase_lid
ATPase_2
AAA_30
AAA_5
AAA_24
AAA_7
DUF815
RuvB_N
bpMoxR
AAA_19
ResIII
nSTAND3
AAA_3
DUF3086
AAA_28
TIP49
TniB
SLFN-g3_helicase
AAA_2
AAA_25
NB-ARC
Mg_chelatase
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
100266082
NCBI-ProteinID:
XP_002285868
UniProt:
E0CR43
LinkDB
All DBs
Position
18:complement(join(2700337..2700436,2702913..2702981,2703062..2703125,2703227..2703356,2704421..2704502,2705267..2705426,2705495..2705574,2706609..2706825,2707075..2707255))
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AA seq
360 aa
AA seq
DB search
MAEAVTVMDIDEEDNHLLKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDT
IDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQQ
IQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKI
IPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQ
STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVV
REVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFTRARAALVAAAK
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcagtcacagtaatggacatcgacgaggaagacaaccatttgctgaaagca
aacaagggcaagtctgtcgttgtcggaggtccgccggatcgcaaagcaactccgtgggta
gagaagtaccggccacagtcccttgccgacgttgccgctcatcgcgacattgtcgatacc
atcgataggctcacgagtgagaatagattgccccatctactactgtatggacctcccggt
acgggtaaaacctcaactattctcgcagtcgctcgcaagctgtacggagaacagttccat
aatatgattctcgagttgaatgcttccgatgatcgtgggatagatgtggtgcggcagcag
atccaagattttgctagcactcagagcttctcctttggtgcaaagtcgtccgtgaagttg
gttctattggatgaggcagatgcgatgacaaaggatgcacagtttgccttgcgccgggtg
attgagaagtacacaaagaacactaggtttgcactaatttgtaatcacgtcaacaagatt
attccagcgctacagtcaaggtgtactcgatttcggtttgcccctcttgatgcagttcat
gttactgagcgacttaaacatgttataaatgctgaaaaacttgatgtatctgagagtggc
ttagcagcacttgtacggctgagcagtggtgacatgagaaaggctttgaacattttgcag
tcaacacatatggcttctcagcagataacggaggaagctgtctatctgtgcactggaaat
ccattgcctaaagacattgagcaaatttcttactggctgctgaatgaatcatttgcagct
agttttgatcgaatatctgaagtcaagatgaggaaaggattagccttagtagatgttgta
agggaggtgacaatgtttgttttcaagatcaaaatgccatcagatgttcgagttcaatta
atcaatgatttagctgacattgagtacaggttgagttttggttgcaatgataagttgcag
cttggatcacttattgcttcatttacacgtgctcgagcagcgttggttgctgctgcaaag
tag
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integrated database retrieval system
