KEGG T01084: 100266091

Vitis vinifera (wine grape): 100266091

Entry

100266091         CDS       T01084

Name

(RefSeq) uncharacterized protein LOC100266091 isoform X1

K06100

symplekin

Organism

vvi Vitis vinifera (wine grape)

Pathway

vvi03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:vvi00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100266091
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvi03021]
    100266091
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100266091
Transcription machinery [BR:vvi03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     100266091
Messenger RNA biogenesis [BR:vvi03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     100266091
    U7-dependent histone pre-mRNA processing factors
     100266091

SSDB

Motif

Pfam:

Symplekin_C SYMPK_PTA1_N CRM1_C

Other DBs

NCBI-GeneID:

100266091

NCBI-ProteinID:

XP_010664451

LinkDB

Position

18:join(6551861..6552063,6553010..6553169,6553587..6553679,6554344..6554446,6554642..6554804,6573644..6573815,6574720..6574848,6574955..6575545,6575651..6576289,6578670..6578738,6581991..6582104,6582180..6582425,6587516..6587563,6587705..6587851,6590568..6590729,6590864..6590926,6591909..6592019,6592138..6592221,6592318..6592365,6605062..6605136,6605965..6606060,6607460..6607540,6607626..6607697,6608915..6608959,6609216..6609299,6609393..6609496,6610686..6610803)

AA seq 1339 aa
MAGASRDQALALLAAANNHGDLAVKLSSLRQAKDILLAVHPSFAAELFPYLVELQSSPET
LVRKSLIEAIEEIGLKAMEHSSILVSVLLVFLRDGDSIIAKQSIVSGTNFFCSVLEELAL
QFHRHGKVERWLEELWVWMVKLKDAVLAIALGPGPFGVKILAMKFLETYVLHFTSDANDF
EKSSIEGSGRAFNISWVVGGHPVLDPASLMSDANRIIGVLLTLLQSASSLSGCLTITVVN
CLAAIARKRPHHYNTVLSALLDFDSSIEMVKGHSASVQYSLRTAFLGFLRCTCPTIMESR
DRLLRALRSMNAGDAADQVIRQVDKMMKNNERASRDARLGRDDPPSSQLSVPGDLFRKRS
MHQDNEEPTNGHGMTSKRIRYGHNMHSASHVQMSDSGQDCASANGVSPKVPLLDNDLTPV
EQMIAMICALVAEGERGAESLEILISQIHPDLLADIIVTNMKQFSKVLSSPIGFGNLPVS
GQTGSSSSPATAAPTITMQSSVLPAQVPFSTAAATSMAHSEMSTVINLPPDSKRDPRRKN
FQDPRRLDPRRVGVPVGLQSVHMVEDTGAIQAEFDGSISLSKPPSLPVVTSVENTSTSLV
SKTEGDDKILKNALISETDQPISREELLDGAKEVDHIPEIGATSDAALSPARTIDEDSAA
PESLDIAVADGADTSPLIETDQHSPARSNTYVSEETSIDLPLPPPYVELTEDQKIRLKKL
ALERIIDSYVYSRETDCSHTRMALLARLVAQIDGDEDVVVMLQKHVLLDYQGQKGHELVL
HILYHLHALMISDSVEHSSFAAVVYEKFLLAVVKSLLEKLPASDKSFSKLLGEVPLLPDS
ALKLLDDLCSSDVTDQHGKVLRDRERVTQGLGAVWSLILGRPLNRQACLNIALKCAVHSQ
DDIRTKAIRLVANKLYLLSYISENIQQYATDMLLSAVNQHISDPELSQSGSSDQRLEAET
GSLETSVSGSQISEPGTSENDPMKGSQSVQNISTVEFHQAQRLISLFFALCTKKPNLLQL
VFNIYGRAPKAVKQAIHRHIPIIIGALGPLYPELLSIISDPPEGSENLLTQVLKILTEEK
TPTPHLIAIVKHLYETKLKDATILIPMLSLLSRNEVLPIFPRLIDLPLDKFQDALANILQ
GSAHTGPALTPAEVLVAIHDISPEKDGIALKKITEACSACFEQRTVFTPQVLAKALNQMV
DHTPLPLLFMRTVIQAIDAYPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTQPHS
FRVLLQLPAPQLESALNKHANLRGPLSAYASQPSIKSSLPRSILIVLGLVNEPHMQQSHP
PSSLHSSDTSSSVHGATLT

NT seq 4020 nt +upstreamnt +downstreamnt
atggccggagcttcccgagaccaagcactggctctcctcgccgctgccaacaaccatgga
gatttggccgtaaagctctcttctcttagacaggccaaagatatcttactagccgttcac
ccctcatttgcagccgagctttttccctacttagtcgagcttcagtcttctcccgaaacc
ctagttcgaaaatctctcatagaggcaatagaagagattggtttgaaagcaatggagcat
tcttctatattagtatcagtcttattagtatttttgagagatggcgattctattattgca
aagcaatctattgttagtgggacaaatttcttttgcagtgttctagaggagttggccctg
cagttccatcggcatggtaaagttgagaggtggcttgaagagctttgggtgtggatggtt
aagttgaaggatgcggtccttgccattgcgttggggcctggtccttttggggtgaagata
ctggcgatgaagtttttggaaacatatgtgctacattttacatctgatgctaatgatttt
gaaaaatcttctatagaaggaagtggacgggcttttaatatttcttgggtggttggtggt
cacccagttctagatccagcttcactcatgtcagatgcaaataggattattggagttcta
ctaacgttgttgcaatcggctagtagtctttctggctgtttgacaattactgttgtcaat
tgtcttgcggccatagcaaggaagaggcctcaccactacaacacggttctttctgcattg
cttgattttgattcaagcattgagatggtgaaaggtcattctgctagcgtccagtattcc
ctgaggactgcctttttaggattcctaaggtgtacttgtccaactataatggagtcaaga
gatagattacttagagcactacgttcaatgaatgctggggatgcagccgatcaagttatt
cggcaagttgataaaatgatgaagaataatgagcgtgcttcacgtgatgctcggttgggc
agggatgatccaccatcaagtcagctgtctgttcctggagatctgtttaggaagaggtct
atgcatcaggataatgaagagccaactaatggtcatgggatgacttccaaacgaattcgt
tatggtcacaacatgcactcagcttcacatgttcaaatgagtgattctgggcaggactgt
gcttctgctaatggtgtctctccgaaggtgcctctgttggataatgatttgactcctgtt
gaacaaatgattgccatgatttgtgctctagttgcagaaggagaaagaggtgctgaatca
cttgaaatccttatatcccaaatccaccctgatctgttggccgatattatcgtaacaaat
atgaagcagttctctaaggtcctgtcatcacctataggatttgggaacttgccagtgtct
ggacaaactggttcttcaagcagtccagctactgctgctccaacaattacaatgcagtct
tcagttctcccagcacaagtgcctttttctacagcagctgcaacaagcatggcacattct
gaaatgtctactgtcattaatctccctccagattctaagcgcgatccacggaggaaaaat
tttcaggatcctcgtcggctggatccacggcgtgttggagtgccggttggactacaatct
gtacatatggtggaggatactggagctattcaagctgagtttgatggttctatttctttg
agcaagccgccttcacttcctgttgtcacaagtgtagaaaatacttccacatctttggtg
tccaaaactgaaggtgatgataaaattttaaaaaatgcattgatttctgaaactgatcaa
ccaatttccagagaggagcttctggatggagccaaggaagttgatcatattccagagatt
ggtgctacttcagatgctgccctttctcctgctcgcacaattgatgaagactcggctgca
ccagagtcattggatattgcagtggcagatggagctgatacatcgcctttgatagaaact
gatcaacattctccagcacggtcaaatacttatgtgtctgaagagaccagcattgattta
cctttgcctccaccatatgttgagctgactgaagatcagaaaattagattgaaaaagttg
gcacttgaacggattatcgattcgtacgtgtattcacgggaaacagattgtagccataca
cgcatggcattacttgctcgattggttgctcagattgatggtgatgaggatgtggttgtg
atgctgcaaaaacatgttcttttggattaccagggccaaaaggggcatgaacttgtactg
cacatcctgtaccacctgcatgcgctcatgatctcagattcagttgaacactcttcattt
gctgctgttgtatatgaaaaatttcttcttgcagtggtaaaatctctgctggaaaaatta
cctgcttcagacaagtcttttagtaaactgctcggtgaagttcctcttttgcccgattct
gccttgaaattgttagatgatctctgctcttctgatgttactgatcagcatggaaaagtt
cttcgcgacagggagcgtgtcactcagggccttggtgcagtatggagtttgattttgggc
cgcccacttaataggcaagcttgcttgaatattgctttgaagtgtgctgttcattcacaa
gatgacattcgaacaaaagccatccgactggtggcaaacaaactttatcttcttagctat
atatcagaaaatattcagcaatatgcaacagatatgttgttgtcagctgttaatcagcat
atttcagatccagagctctcacaatctggttccagtgatcaaagattagaagcggagact
ggaagcctggagacatcagttagtggttctcaaatttctgagcctggaacatctgaaaat
gaccccatgaagggttcacaatctgttcagaacatctcgacagtggaatttcatcaagct
caacgccttatttctttgttttttgctttatgtacaaagaaacctaatcttcttcaactt
gtattcaatatttatgggcgtgctcctaaggctgttaagcaggcaatccatcgtcatatc
ccaattattataggggctctagggccattatatcccgaattgctcagtataatatcagat
ccaccagaaggaagtgaaaatctgctgacacaggtgctgaaaatattaactgaagagaag
acgccaaccccacacctgattgcaattgttaagcatttgtatgaaactaaattaaaggac
gccacaattcttatcccaatgctgtccttgctgtcaagaaatgaggttttacctattttt
cctcggctcattgaccttccattggacaaatttcaggatgcacttgccaatatactacag
ggttcagctcatacaggtccagcattgacgcctgcagaagtgttggttgctatccatgac
attagtcctgagaaagatggcattgcactcaaaaagataacagaagcttgctctgcttgt
tttgagcaacgtacggttttcacaccacaggttttggcaaaggccttgaaccagatggtt
gatcatactccattgcctctactcttcatgagaacagtaattcaggcaattgatgcttat
cctaccctggttgattttgtaatggagatactttccaagcttgtgagtaaacaggtgtgg
agaatgccaaagttgtgggtcgggttcttgaaatgtgtgtctcagacacagccacattct
ttccgtgtactgttacagctaccagctccacagcttgaaagtgctctgaacaaacatgct
aacctcagaggtcctctttctgcttatgctagccaaccaagtataaaatcatcattgcct
agatcaattctcatagttcttggtctggtaaatgaaccccacatgcagcaatcacaccct
ccatcgtctctgcattcatcagacacaagttcttctgttcatggagcaactctaacttga

DBGET integrated database retrieval system