Vitis vinifera (wine grape): 100266252
Help
Entry
100266252 CDS
T01084
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100266252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvi03021
]
100266252
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100266252
Transcription machinery [BR:
vvi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100266252
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100266252
U7-dependent histone pre-mRNA processing factors
100266252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
100266252
NCBI-ProteinID:
XP_059597067
LinkDB
All DBs
Position
12:complement(join(21417199..21418839,21420960..21421109,21421194..21421239,21422411..21422508,21422620..21422769))
Genome browser
AA seq
694 aa
AA seq
DB search
MASTGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS
DYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINS
MNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDK
KNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKE
LMPPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLA
EKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLK
QIYESVESLPDEESEVPAFRVHERVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNIS
REIPKVVVESEAIKTEEENGKKAEKVIHALLVSLFGDVKLGENGNLVISVDGNVAHLDKQ
SGNVESENEGLKERVRVAFQRIQNAVKPIPLSVS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacagggccaccacagtctttgaagagaccagattcctcattaacaagagaa
ggagaccagctgattattacccctctaggtgctggaaatgaagtgggccgttcctgtgtc
tacatgtcctataaagggaaaaccatattgtttgactgtggaattcatcccgcatactcg
ggcatggctgctttgccatactttgatgagattgatccttcgaccattgatgtccttttg
gtgacacactttcacttggatcatgctgcatcccttccatatttcctggagaagaccaca
ttcaaagggcgagtttttatgactcatgcaaccaaggctatctacaagttgcttttgtct
gattatgtaaaagtgagcaaagtttcagttgaagatatgttgtatgatgaacaagacatt
cttcgctccatggataaaattgaggttattgatttccatcagactttagaagtaaatggc
atacgattttggtgttatacagctggccacgtccttggtgctgccatgtttatggttgat
attgctggtgtccgagtactttacactggagactattctcgtgaagaagatcgtcatctc
cgtgctgctgagatcccacagttctcccctgatatttgcataattgaatccacttatggt
gtccaactccatcagcctcggcatgtgcgagaaaagcgcttcacagatgtcatccactca
accatttctcaagggggccgtgttctaatccctgcatttgctctaggtcgtgcccaagaa
ctcctccttatccttgatgagtattggtctaaccatcctgagctccataacatccccata
tattatgcttccccccttgcaaaaaggtgcatggctgtttaccagacatacatcaattcc
atgaatgagaggatccgcaaccaatttgcaaattcgaatccttttgatttcaagcacata
tcacctttaaagagcattgagaattttaatgatgtaggtccatcagtggtgatggcgagt
ccgagtgggcttcagagtgggttgtcaagacaactgtttgatatgtggtgctctgataag
aaaaatgcatgtgttatacctgggtatgtcgtggaagggacattggcaaaaaccatcatc
aatgaacccaaggaagttactctaatgaatggtcttactgctcccctcaacatgcaggtg
cattacatttctttctctgctcatgcagattttgcacagacaagtacattcttgaaggag
ctcatgccacctaacatcattcttgtccatggagaagctaatgagatggggaggctcaaa
cagaagcttatcacccagtttgctgaccgcaacaccaaaattatttccccaaagaactgt
cagtcagttgaaatgtatttcaactctgagaaaatggcaaaaaccattgggaggctggct
gaaaagaccccaggagttggtgaaactgtcagtggtttactggtaaagaaaggtttcact
tatcagataatggcacctgatgatctccatgtcttctcgcagctatccacggcaaatgtc
actcagaggattactattccttacactggtgcctttggtgtaataaagcacaggctgaag
cagatatatgagagtgtggagtcattgccagatgaagaatctgaggttccagcttttcga
gtccatgaacgggtgacagtgaagcatgagtcggagaagcatatttcactgcattggaca
tcagatcctattagtgacatggtctctgattccattgtggctctggttttaaatatcagt
cgtgagatccccaaggtagtagttgaatcagaggccataaaaactgaagaagaaaacggg
aagaaagcagaaaaggttatccatgcactccttgtttctctttttggagatgtgaagttg
ggagagaatgggaacctggtgataagcgttgatggaaatgtggcacatcttgataaacag
agtgggaatgttgagagtgaaaacgaaggccttaaggaaagggtgagagtagcattccag
cggatccaaaatgctgtgaagccaatccctctatctgtgtcttag
DBGET
integrated database retrieval system
