KEGG   Vitis vinifera (wine grape): 100266510
Entry
100266510         CDS       T01084                                 
Name
(RefSeq) splicing factor U2af large subunit B
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100266510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100266510
Spliceosome [BR:vvi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    100266510
 Complex B
    100266510
SSDB
Motif
Pfam: RRM_1 RBD_DEAH11 RRM_9
Other DBs
NCBI-GeneID: 100266510
NCBI-ProteinID: XP_010650126
LinkDB
Position
5:complement(join(9001514..9002258,9002360..9002439,9002597..9002689,9002809..9002916,9007354..9007443,9007592..9007633,9021256..9021327,9033629..9033763,9033869..9035314))
AA seq 936 aa
MSRSNRPKEKYGKSTELYLDNFKEGTAARTRPFSFDEIMLRRKNKKLYGDVKDGAGEEGN
ISRKDIVKNVSDCYESDKGYKHNEDSFPGAINHSSEDFVKVSSRKKDENTSMKEGNLGNV
KDKESHNSEDKLKAKPNKGMTDKSKEGKINQRVHGRKKIDERSRRSSDDSESEPEKKFSR
DSVGKDRYADRSRKSEKESKRKHRTGEDEKNRERNSMKKHDPGKRHESEFLDRKERRESP
PSRYEESRPKRRRSRSRERDKDRDKRSSSLSPRAQKRTSHHGREHAELSLHSLKDRSGRQ
HSDADRNRISNNGSSSHFRRHGGSASGLGGYSPRKRRTEAAIKTPSPTNRSPEKKSAGWD
LPPSRTDGMNAGSVLSSLQVLKPTVSSNADELPSAVPVAVPVTATTAKPPLPRIYSDAVS
KNKNVSIDSIQLTQATRPMRRLYVENLPVSSSEKALMECLNNFLLSSGINHVQGTPPCIS
CIIHKEKGQALVEFLTPEDASAALSFDGISFSGSILKIRRPKDFVDMTGVQEKLVAAPDA
ISDIVKDSPHKIFIGGISRALSSDMLMEIAAAFGPLKAYRFQVNEDLGEPCAFLEYVDQS
VTLKACAGLNGMKLGGQVLTVVQAIPNALAMENTGNLPFYGIPEHAKPLLERPTQVLKLK
NVVNPDDLSSLSEAELEEILEDIRLECTRFGTVKSVNIVKYNNSHVSTLEVYEAADNTGS
NLGCDGNSMKAETLGGGTDNGSSDISGIKPPTDVKDLKEVDEVVERNSISDDKSLTDLIK
NELCEPSHIDSNTAVKEPGCPDGSDDIPRGLPDQLNNMKHEVELRNDKAADVIQEDFIIK
NKLMTVEEETNRKLLGTSAELDSSPGIKSDFTGKNDSEKGLCDLDDMFEVGCVLVEYGRT
EASCMAAHCLHGRYFDDRVVVVGYVALDLYRMKFPR
NT seq 2811 nt   +upstreamnt  +downstreamnt
atgagcagatctaatcggccaaaagagaagtacggtaaaagtactgagctttacctggat
aatttcaaagagggaactgctgctaggacaagacctttcagctttgatgaaataatgctt
agaaggaaaaacaagaaactgtatggagatgttaaagatggagctggagaagaagggaat
atatcaaggaaagatattgtgaagaacgtttctgattgttatgaatctgacaaaggttat
aaacataatgaggattccttccctggtgccataaatcattcttcagaggattttgtgaag
gtaagttccagaaagaaggatgagaacacttccatgaaggaaggcaatttaggtaacgta
aaagataaggaaagtcataattcagaagacaaattgaaggcaaaaccaaacaaaggcatg
actgacaaatctaaagaaggaaagattaaccaaagggttcatggaaggaaaaaaattgat
gagagatcaaggcgatcaagtgatgattctgaaagtgaacctgaaaagaagttttcaaga
gattcagttgggaaggatagatatgcagacagaagcagaaaatctgaaaaagaaagcaaa
aggaaacaccgaactggagaagatgagaaaaatagagaaaggaattctatgaagaaacat
gatcctggaaaacggcatgaatctgaatttctggatagaaaggaaaggagggaatcaccg
ccatctcgttatgaagaatcaaggcctaaaagaagaaggtcaaggagccgagagcgtgat
aaggatagagataaaaggtccagttctctttcaccaagggcacagaaacgtacatctcat
catgggagggagcatgcagagctttcattgcactctcttaaagataggtcaggaagacag
cattctgatgctgacaggaatagaatatcaaataatggttcaagcagccatttccgacga
catggtgggtctgcaagtgggcttggtggctattcaccaaggaagagaagaactgaggct
gctattaagactccttccccaactaatcgctcgccagagaagaaaagtgctggttgggat
ctcccaccttctagaacagatggcatgaatgctggttcagttctttctagtttgcaggtt
ttaaaaccaactgtatcatcaaatgcagacgaattgcctagtgctgtgccagttgctgtt
ccagtcactgcaactacagcaaagccccccctccctagaatttattcggatgctgtatca
aaaaacaagaatgtctccattgactccattcaactaacacaggccacccgccctatgagg
aggctttatgtggaaaatttaccagtttcatcctctgagaaagctctaatggaatgcctt
aataactttttgctgtcttcgggtattaaccatgtccaaggaaccccgccatgtatcagc
tgcattattcacaaagagaaaggccaagctctcgtggagtttctcacacctgaggatgct
tcagcagctctttcttttgatggcatatccttctctgggtccattctcaagattagacgc
ccaaaagactttgttgacatgactggtgttcaagagaaattagtagctgcacctgatgca
ataagtgatattgtcaaggattcacctcacaagatcttcattggtgggatttcaagggct
ctttcatctgatatgcttatggagattgctgctgcctttggtcccttgaaggcttaccgc
tttcaggttaatgaggatcttggtgagccttgtgcttttctggagtatgttgaccagtca
gttactcttaaggcttgtgcgggtctgaatggtatgaagttgggaggacaagttttaaca
gtagttcaagctattccaaatgcattggctatggaaaatactggaaacctgccattttat
gggatccccgagcatgcaaagccattacttgagaggcccacccaagttctgaagcttaaa
aatgtggtaaatccagatgacctttcatcactttctgaagcagaattggaagaaatattg
gaagacattcggttggagtgcaccaggtttggcactgttaaatctgttaacattgtcaag
tacaacaacagtcatgtaagcaccctagaagtatatgaagctgctgacaatacaggttct
aacttgggttgtgatggcaatagcatgaaggcagaaaccttaggaggaggtactgataat
ggctctagtgatattagtggcataaagcctcctactgatgtcaaagaccttaaagaagtt
gatgaagttgtggaacgtaacagcatttctgatgataaatctttgactgatcttataaag
aacgaactttgtgaaccaagtcatattgatagtaacacggctgttaaagaaccaggctgc
ccggatgggtctgatgatattcctagaggactccccgaccagcttaacaatatgaaacat
gaagtggaactccgtaatgacaaggctgctgatgttattcaagaggattttatcatcaaa
aacaaattgatgactgtggaagaggaaaccaataggaagttgttgggaacttctgctgaa
ttggatagttccccaggaataaaatcagattttactgggaagaacgacagtgagaaaggg
ttgtgtgatcttgacgacatgtttgaggtaggctgtgttctggtggagtatggaagaaca
gaagcctcttgcatggcagcacattgtttgcatggacgatattttgatgaccgggttgtg
gtcgtggggtatgttgctctcgatctttaccggatgaagtttcctagatga

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