KEGG   Vitis vinifera (wine grape): 100266615
Entry
100266615         CDS       T01084                                 
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
  KO
K14554  U3 small nucleolar RNA-associated protein 21
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100266615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vvi03009]
    100266615
Ribosome biogenesis [BR:vvi03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    100266615
SSDB
Motif
Pfam: Utp21 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_EIPR1 PEP5_VPS11_N Beta-prop_VPS8 WD40_RFWD3 Beta-prop_LRRK2 WD40_like WDCP VID27 VPS8_N Utp12 Cytochrom_D1 Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 100266615
NCBI-ProteinID: XP_002269448
UniProt: D7THK7
LinkDB
Position
8:complement(join(16094939..16095088,16095429..16095643,16095791..16096007,16096150..16096408,16096721..16097015,16097123..16097207,16098513..16098725,16099044..16099183,16106527..16106569,16107674..16107739,16108922..16108994,16109427..16109509,16110646..16110821,16113610..16113853,16113943..16114146,16116881..16116981,16120285..16120312,16121328..16121453))
AA seq 905 aa
MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAWQIYNCAKLNLVLVGPQLPKKIR
ALASYRDYTFAAYGNDIAVFKRAHQVATWSRHNAKVNLLLLFGEQILSIDVGGNMFMWAF
KGIQQNLAPIGHVMLEDKFSPSCIMHPDTYLNKVILGSEEGSLQLWNISTKQKLYEFKGW
KSSICCCVSSPALDVVAVGCADGTIHIHNIRYDEEIVTFSHSTRGAVTALSFSTDGRPLV
ASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPVLMSSSADNSIKMWIFDTS
DGDPRLLRFRSGHSAPPLCISFYANGRHVLSAGQDRAFRLFSVIQDQQSRELSQRHVTKR
AKKLRVKEEEIKLKPVIAFDFAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILKPC
PENQSPVKACAISACGNFAVLGTAGGWIERFNLQSGISRGSYVDLSERRSCAHDGEVVGV
ACDSTNTLMISAGYHGDIKVWDFKGRELKSRWEIGCAVVKIVYHRSNGLLATATDDLVIR
LFDVVALRMVRKFEGHIDRVTDLCFSEDGKWLLTSSMDGTLRIWDVILARQIDAIHVDVS
VTALSLSPNMDVLATTHVDQNGVYLWVNQTMFSGSSNIDSYASGKEVVSVKLPSVSSTEG
SHKDSEKPDLNHLQFRDDFQNPHFHEKIPDLVTLSLLPKSQWQSLINLDIIKIRNKPIEP
PTKAEKAPFFLPSVPTLSGQIVFEPSEISSEKRVAEGDELENSRSDLPQSQFLQLLQSSA
VKKSFSVFTDYIKSLSPSTLDVELRMLQIIDDDNEQEPDTRPDLFPIELLLDYFIHEISC
RNNFEFIQAVIRLFLKIHGETIRRQSNLQDKAKKLLEVQCAVWQSVDKLFQSSRCMVTFL
SNSQF
NT seq 2718 nt   +upstreamnt  +downstreamnt
atgggaattttcgaaccctttagagcaataggatacatcacaagcacggttcctttctct
gttcagaggttgggcactgaaactttcgtcaccgtcagtgtcggcaaagcttggcagatt
tataactgtgctaagctcaatttggtgcttgttggtcctcaactgccaaaaaagattcga
gctcttgcttcttatcgtgactacacatttgctgcatatgggaacgatattgcagtattt
aagcgtgcgcatcaggtggcaacttggagtaggcataatgccaaggtcaatttgttgcta
ctgtttggagagcaaatcctcagcattgatgttggtggtaatatgttcatgtgggcattt
aaaggtatccaacagaatcttgctccaatcggacatgttatgctagaagacaagttcagc
ccaagctgtataatgcatccagatacttacctaaacaaggtgattcttgggagcgaggaa
ggctctctgcaactttggaacattagcacaaaacaaaagctgtatgagttcaaaggctgg
aaatcatctatatgttgttgtgtttcgtcacctgcactagatgttgttgcagtcggctgc
gctgatggaactattcacattcacaacattcgatatgatgaggagatagttacatttagt
cactctacacgaggtgctgtgaccgccttgtcttttagcactgatggacgacctcttgta
gcatctggaggttcatctggtgttataagcatatggaatctagagaaaagaaggctccaa
tcagtcataagagaggctcacgatagttcaataatttctctacatttctttgccaatgag
ccagtgctgatgagttcatctgcagacaactccataaaaatgtggatttttgacacaagt
gatggggatcctcgtcttcttcgcttcagaagtgggcatagtgctcctccactttgcata
agtttctatgccaatgggaggcatgttctatctgctggtcaagatcgcgcttttcgtctt
ttctctgtcatccaggaccaacaaagtagagagctttctcaacgtcatgtaactaaaaga
gctaagaaactcagggtgaaggaggaagagataaagttgaagcctgttattgcatttgat
tttgctgaaattagggagcgcgattggtgcaatgtggttacatgtcatatggatactgca
caagcatatgtatggagacttcaaaactttgtccttggggagcatatcctgaaaccatgt
cctgaaaatcaatcacctgttaaggcctgcgccatcagtgcatgtggcaattttgctgtt
ctagggaccgcaggtggttggattgagcgatttaatcttcaatcaggaatcagccgaggc
agttatgtggacttatcagaaagaagaagctgtgctcatgatggagaagtggttggagtt
gcttgtgattcgacaaataccttaatgataagtgcaggctatcatggggatataaaggtt
tgggatttcaagggccgtgagctaaaatccagatgggaaattggttgtgctgtggtgaag
attgtttatcatcgttctaatggtcttttagctactgcaactgatgatttggttatccgg
ttgtttgatgttgtggcgttaagaatggttcggaaatttgaaggtcatatagaccgtgtt
acagacttgtgtttcagtgaggatggtaaatggcttttgacatccagcatggacgggaca
cttagaatttgggatgttatcttagcaagacaaatagatgctattcatgttgatgtgtct
gtaacagcactgtctctttcacccaatatggatgttttagcaactactcatgttgatcaa
aatggggtctatctgtgggttaatcagacaatgttctctggatcttctaacatcgattct
tatgcaagtgggaaggaagttgtgagtgttaagttgccttctgtctcttcaacagaaggt
tctcataaggattctgagaaacctgatttgaatcacttacaattcagggatgactttcaa
aacccacatttccatgagaaaatcccagatctagtcacactctcactattgcccaagagt
cagtggcaaagcttgatcaatttagatatcataaagattcgcaacaaaccaattgagcct
ccaacaaaagctgaaaaggcgcctttcttcttgccttcagttccaacactttctgggcaa
atagtatttgaacccagtgagatttctagtgaaaagagggttgcagaaggtgatgaactg
gaaaacagtagatctgatttgccgcaatctcagtttttgcaacttctgcagtcctcagca
gtgaagaaaagtttttcagtcttcactgattatattaaaagtttatccccttctactttg
gatgtggaattgcggatgcttcaaattatagatgatgataatgagcaagaacctgataca
agacctgacttatttccaattgaactgctgttggattatttcatacatgagatttcttgc
agaaacaattttgagtttatacaagctgttatcagattgtttttaaagatccatggtgaa
acaattcggcgtcagtcaaacctacaggataaagcaaagaagcttctagaggttcagtgt
gcagtatggcaaagcgtggataagttgttccaaagttccagatgcatggttacatttcta
agcaattcacagttttaa

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