Vitis vinifera (wine grape): 100267056
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Entry
100267056 CDS
T01084
Name
(RefSeq) uncharacterized protein LOC100267056
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100267056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100267056
03041 Spliceosome [BR:
vvi03041
]
100267056
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100267056
Spliceosome [BR:
vvi03041
]
Complex B
Other components
Prp19-related factors
100267056
Complex C
100267056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21_C
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
100267056
NCBI-ProteinID:
XP_059595994
LinkDB
All DBs
Position
10:join(5237280..5238771,5243302..5243486,5243589..5243759,5247832..5248284,5249707..5250168)
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AA seq
920 aa
AA seq
DB search
MAIAEELYPSQEDLLYEEELLRNQFSLKLWWRYLIARSDSPFKKRFLIYERALKALPGSY
KLWYAYLRERLEIVRNLPIKHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTDQELLTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSKKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
MNSGLWQEAAERLAGVLNDDQFYSIKGKTRHRLWLELCDLLTKHATDVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLTEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
AYKMENMDSDEEEDGAQDNDTDEEEDIRLDINLSVANFEKKILHGFWLHDFNDVDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTKQILTYTEAVRTVDPMKAVGK
PHTLWVAFAKLYENHKDVANARVIFDKAVQVNYKTLDNLASVWCEWAEMELRHKNFKGAL
ELMRRATAEPSVEVKRKVAADGNEPVQMKLHKSLRIWTFYVDLEESLGTLESTRAVYERI
LDLRIATPQIIINYSLLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEMAPAESVKPLYMQYAKLEEDFGLAKRAMKVYDQAAKAVPNNEKLS
MYEIYIARASEIFGIPKTREIYEQAITSGVPDKDVKTMCMKYAELEKSLGEIDRARGIFV
YASQLADPRSDADFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFLLPEYLMQKD
PKLNLDEAMDTLKQAGVPEDEMAALERQLVPTANNTAAKESSRKVGFVSAGVESQPDEGI
KVTANHEDIELPEESDSEDEKVEIAQKDIPNAVFGGLVRKREEADGDGDGDGDEDGAASK
DKDRDSQLGALERIKRQRQA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcagaggagctgtaccctagccaggaggacctcctctacgaggaggaactg
cttcggaaccagttcagcttaaagctgtggtggagatacctcatcgctcgaagcgactca
cccttcaagaaacgattcttgatctacgagcgagccctcaaagccctccccggaagctac
aagctctggtatgcttacctccgcgaacgcctagaaattgttcgcaatctccctatcaaa
cactcacaatacgaaaccctcaacaataccttcgagcgtgcgctggtcactatgcacaag
atgccacgaatttggatcatgtacctccaaaccctaaccgatcaggagcttctcactcgg
actcgaagaacgttcgaccgtgctctctgcgcactaccggtgacccagcacgatcgaatt
tgggagccctatctcgtattcgtgagcaaaaagggtgtccccatcgagacctcgcttagg
gtttatcggcggtatttgaagtatgatcccacccacattgaggattttattgaatttctt
atgaattcaggtctttggcaggaggcagcagagagattggccggggttttgaatgatgat
cagttttattcgattaagggaaagacaaggcataggttgtggttggagttgtgtgatttg
ttgaccaagcatgctacagatgtttcggggttgaatgtagatgcaataattcgaggtgga
attaggaagtttactgacgaggttgggcggctgtggacgtcacttgcggattattacatc
cggaggaatttaactgagaaggcgagagatatttttgaagagggtatgaccacagtggtt
acagtgagggatttcagtgtgatttttgatgcttattcacagtttgaggagagtatgctt
gcatataaaatggagaatatggatagtgatgaggaggaagatggcgctcaagataatgac
actgatgaggaggaagatattcgtttggatattaatctttcagtggcaaattttgagaaa
aagatccttcatgggttttggttacacgattttaatgatgttgatttaagattggctcga
ttggagcatctcatggatagaaggccagagttggcaaatagtgtccttctccggcaaaat
ccccataatgtggaacaatggcaccggaggattaagctatttgagggaaatcctacaaag
cagatattgacttacactgaggctgtgagaacggttgatcccatgaaagcagtgggaaag
cctcatactttatgggttgcttttgctaagttatatgagaaccacaaagatgttgccaat
gccagagttatttttgataaggccgtgcaagtgaattacaaaactttggataatctggct
agtgtgtggtgtgagtgggcagaaatggaattgaggcacaagaattttaaaggagcacta
gagctgatgaggcgtgctactgcagaaccatctgttgaggtcaagcgaaaagtggctgct
gatgggaatgagcctgtgcagatgaaactgcacaagtccttgcgaatttggacattttat
gttgatttggaagaaagcctgggaactttggagtccacacgtgctgtttatgagcggata
ttggatttaagaatagccactccacaaattataatcaactattcattgcttttggaagaa
cataaatactttgaggatgctttcaaggtgtatgaaagaggtgtaaagatatttaaatac
cctcatgtaaaggatatatgggtcacatatctgtccaaatttgtgaaaaggtatgggaaa
tccaaattggaacgtgcaagagagttgtttgagcacgctgttgaaatggctccagctgaa
tctgtgaagcctttgtatatgcaatatgctaagctggaagaggactttggtttagctaag
cgagctatgaaggtttatgatcaagctgctaaggcagttcctaacaatgaaaaattgagc
atgtatgaaatttacattgcacgtgcttctgaaatatttggcattccaaagacaagagaa
atatatgagcaggcgatcacatccggtgttccagacaaagatgtgaagacaatgtgcatg
aagtatgcagagctggagaagagtttgggtgaaattgaccgtgcccgtggtatatttgta
tatgcatctcaactggcagatccacgatcagatgcagatttttggaataagtggcatgag
tttgaggtccagcatggtaatgaagacacctttagagaaatgcttcgaatcaaacgaagt
gtctcagctagctacagccagacacactttctacttccagaatatctgatgcagaaggat
ccaaagctgaacttggatgaagcaatggacacattgaagcaagccggggtccctgaagat
gaaatggccgccctagaaaggcagttagtgccaacagccaataacactgctgctaaagag
agcagtcggaaagttggttttgttagtgctggagtggaatcacagccagatgaaggaata
aaagtaactgcaaatcatgaagacattgagctgccagaagagagtgactcggaagatgaa
aaggtggagattgcccaaaaggatattccaaatgcggtgtttggaggtttggtccggaag
agggaagaagctgatggggatggggatggggatggggatgaggatggagctgccagtaaa
gataaagaccgagacagccaacttggtgcactggagagaataaaaagacaaaggcaggcc
tga
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