Vitis vinifera (wine grape): 100267161
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Entry
100267161 CDS
T01084
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100267161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvi03019
]
100267161
Messenger RNA biogenesis [BR:
vvi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100267161
mRNA cycle factors
Common to processing body (P body) and stress granule
100267161
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Ter
Bt_P21
Motif
Other DBs
NCBI-GeneID:
100267161
NCBI-ProteinID:
XP_002276189
UniProt:
A0ABY9C3W1
LinkDB
All DBs
Position
6:join(19575158..19575226,19575356..19575961,19576067..19576189,19578057..19578289,19578377..19580324)
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AA seq
992 aa
AA seq
DB search
MIVQMDKMSAPSSRELAQRLYDKNIELENRRRKSAQARIPSDPNAWQLMRENYEAIILED
HAFSEQHNIEYALWQLHYRRIEELRAHFSAALASSGSATSQSAKGPLRPDRVAKIRLQFK
NFLSEATGFYHELILKIRAKYGLPLGNFSEDSENQIVMEKDVKKSTEMKKGLISCHRCLI
YLGDLARYKGLYGEGDSKTRDYAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVAV
YRYFRSLAVDSPFSTARDNLIVAFEKNRQNFSQLLGDAKASAVKESPVRMTAKGRGKGEA
KLPSKDSNMETSIVKGTASSIHETYKTFCIRFVRLNGILFTRTSLETFAEVLSLVSSSLN
ELLSSGLEEEMNFGKDAVENGLVIVRLISILIFTVHNVNRETEGQTYAEILQRTVLLQNA
FTAVFEFMGHILKRCVQICDSSSSYLLPGILVFVEWLACCPDVAVGNDVEEKQGTVRLVF
WNHCISFLNKLLLDGLVSIDDDEDETCFSNMSRYEEGETENRLALWEDFELRGFLPLVPA
QTILDFSRKHSYGSDGNKERKARVKRILAAGKALANVVKVDQKTVCFDSKVKKFVIGVEP
QVSDDLTFSPYLGMPKSNGVALEFPADKTMNLGIMQPKAPNVEGEEEDEVIVFKPTVNEK
RTDVIGLTQSPHQGLEPDQNASARELQFYGGSVSAPLNNLHQLTALDASSQPLVSVANIV
PQHLQQLLPRASNWFVEEGASVANGLRSLSFLENGHQMKPGIQEDAIVSYPASLPLPIQP
YANLDAHGMFYGRTKPLESIIPSKIGSIASAGLNADCLIVKTSSDLPASSRKTPVSRPAR
HLGPPPGFSSVPSKQVNEPTSGSDSMTENPLMDDYSWLDEYQLPSSMKGKGLNSSINYPP
NASPQLVSNSNTLAGTITFPFPGKQVPTAQIQVEKQKAWQDLQPREHLKLHHEQQLQQPQ
QQQQQLLKEYQQFTPLPDQYQGQSVWPGRYFV
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgattgtacaaatggataaaatgtctgctccttcatcacgggagcttgctcaacgtctt
tatgacaagaatattgagttggagaatagacgtcggaagtcggcccaggcaagaattccc
tcagatcctaatgcctggcaactaatgcgagagaattatgaagccataattctcgaggat
catgctttttctgaacagcataatattgaatatgctctctggcagttgcattaccggcgg
attgaggaactaagggcgcacttcagtgctgctttagcttcttcaggctcagccacatct
cagagtgcaaaaggcccactgcgtcctgatcgagttgcaaaaatacgtctgcaatttaaa
aacttcctttctgaagcaactggattttaccatgaactaattttaaaaatcagagctaag
tatgggcttcctctgggaaatttctctgaggattcagagaatcaaattgttatggagaaa
gatgtaaagaaatctacggagatgaagaaagggttgatatcatgtcatcgttgtttgata
tacctgggtgatcttgctcgttacaaaggactatatggagagggtgactccaaaactcgt
gattatgcagcagcttccagttactatctgcaagctgcatctctctggccgtcaagtggg
aaccctcatcatcagctggcaatattggcttcctattctggtgatgagttggtggctgtg
taccggtactttcggagtttggctgtagatagtcccttttcaactgcaagggataacttg
attgttgcatttgagaagaatcgtcagaatttctctcagctgcttggggatgctaaagct
tctgctgttaaggagtcacctgtgcggatgactgccaaaggtagagggaaaggggaggca
aaacttccatcaaaagattccaacatggaaaccagtattgtcaaggggacagcatccagt
atccatgagacatataagaccttctgcattcgatttgttcgtctaaatggaatccttttc
acccgtacaagtttggaaacatttgcagaggttctctccttggtcagcagttctctgaat
gagcttctttcttctggactggaagaagagatgaattttggtaaagatgctgtagagaat
ggtcttgtcattgttaggctaatctccattctcatattcacggttcacaatgtgaatagg
gagactgaaggtcagacttatgcagaaatcttacagcgtacggttctgctccaaaatgca
tttactgcagtttttgagtttatgggtcacatactaaagagatgtgtgcagatctgtgat
tcttcatcaagctaccttttacctggcattctggtttttgtggagtggttggcctgttgt
ccggatgttgcagtgggcaatgatgtcgaagagaaacaaggaactgttagattggtgttt
tggaaccattgtatatcctttctgaataagctgttgttggatgggctggtgtccatagat
gatgatgaagatgagacttgtttttctaacatgagcaggtatgaagaaggggaaactgaa
aaccgacttgcattgtgggaggattttgagctgagaggattcttaccccttgttcctgca
caaaccattttggatttttcaaggaagcattcatatggaagtgatggcaataaagagaga
aaagcacgtgttaaaaggattcttgcagcaggaaaggccctagcgaacgtggttaaggtt
gatcagaaaacagtctgttttgattcgaaggtaaagaagtttgtcattggtgttgagcct
caagtatcagatgatttgacattttccccatatttaggcatgccaaaatctaatggtgtg
gcactagaatttccggcagacaaaacaatgaatttgggaattatgcagccaaaggcacca
aatgtggaaggggaagaagaggatgaggtgattgttttcaagccaacagtgaatgagaag
cgaactgatgtgattggtctaacccagagccctcaccaaggcctggagcctgaccaaaat
gcttctgcacgtgaattgcaattttatggtggttctgtttctgcccctctcaacaatctt
caccagcttactgctttagatgcaagttcacagccacttgtatctgttgctaatattgtt
ccccagcatctgcaacaacttctgccacgtgcttcaaattggtttgtggaagagggagct
tctgttgcgaatggtttgagaagtttgagttttttggagaatggacaccaaatgaaacct
gggatacaagaagatgcaattgtttcttatcctgcttcacttccccttcctatccaacca
tatgccaatcttgatgctcatggcatgttttatggtcggacaaaacccctagaatcaatc
ataccatccaagattggctctattgcatctgctggacttaatgctgattgtttgattgta
aagacatcatcagatttacctgcaagttcgaggaaaaccccagtgagccgacctgctagg
caccttggacctccacctggttttagctcagttccttctaaacaagtaaatgagcccaca
tctggctcagattcaatgactgagaatccactaatggatgactatagctggttggatgaa
tatcagttaccatcatcaatgaaaggcaaagggcttaacagttccatcaattatccacct
aatgcaagccctcaacttgttagtaacagcaataccttggcagggacgattacttttccc
ttccctggaaaacaagttccaacagcacagatccaagtggaaaaacagaaagcatggcaa
gatctccaacctcgtgagcatctaaaactacaccatgaacagcagctgcagcaaccacaa
caacaacagcaacaactcctgaaagaatatcagcaatttactccactgccagatcaatat
cagggacagtctgtgtggccaggtcgttatttcgtgtga
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