Vitis vinifera (wine grape): 100267328
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Entry
100267328 CDS
T01084
Name
(RefSeq) pre-mRNA splicing factor SR-like 1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
vvi
Vitis vinifera (wine grape)
Pathway
vvi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100267328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvi03041
]
100267328
Spliceosome [BR:
vvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100267328
Complex C
U4/U6.U5 tri-SnRNP related factors
100267328
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Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
100267328
NCBI-ProteinID:
XP_010648938
UniProt:
F6HI04
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All DBs
Position
4:complement(join(14628890..14629828,14631859..14631930,14634594..14634674,14644281..14644568))
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AA seq
459 aa
AA seq
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MEIQTSGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYAGDPKTLWNWFEPYVK
DEEEFSPGSTGRMTTMGAYVRDLLLGQYYFDTLFPRIPVPIMRQIVANLEKMKLPSKHAG
VTGDTTRHGSDDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRTLPPPPPSYDRNSS
DDLRRSPSSRRSQSRELSDREYSDRDRDRGKSRELDRDRDHDRERDRERDRTRNRDKDRD
RAMDRDRDRDKDRDRDRDRDRDRDKDKDRDRDRERERDRDRRHDYDRRSKYTERESRRDY
DRSSRDGSRYNRETSSRRSRSRSRSRSQSLQARNDHIDHRSSPLADGSKEKTSASANLAK
LRDLYGDTGDQKGGSAMERGSRRDNSGEEVIRLGGSSWK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggagatacaaacatctgggaagccaatagattcgttgttagagaaggttctgtgtatg
aacattctctcatctgattactttaaagagctttaccggctgaaaacataccatgaagtg
gtagatgagatctataatcaagttgatcatgtggagccatggatgactggaaactgtcgg
ggcccatccacagcattttgccttctttacaagttttttacaatgaagctcactgtgaag
caaatgcatggactactaaagcacccagattctccctatattagagctgtaggattcctc
tacttgagatatgctggggatccaaaaactttgtggaactggtttgaaccatatgtgaag
gatgaagaggaattctctcctggatctactggtagaatgaccacaatgggtgcatatgtt
cgtgatttactcctgggacagtactactttgatacccttttcccacgaatcccagttccc
ataatgcggcagatcgtggctaatcttgaaaaaatgaagcttcctagcaaacatgctggt
gtcacaggggataccacccgtcatggttctgatgatactgcacgtcggccaccttctgtg
aaagctgccctttctgtctcttttggtcagcgtgctccacatcgtgcttcaaccagggac
tcatctcctgttcgtcgcaccttaccaccaccaccaccttcttatgataggaatagcagt
gatgatttgcgaagatctcccagcagccgtcgcagccaaagccgtgagttgtctgatcga
gaatattcagacagggatcgagacaggggcaaatctcgggaattggacagggacagggat
catgatcgagagagggacagggaaagagacagaacccgaaacagagataaggatagagac
agggctatggacagagacagagacagagacaaagacagggacagggacagagacagagac
agagacagagacaaagataaagacagggacagagatagggagcgggaaagggaccgagac
aggaggcatgattatgatcgcagatccaagtatacagaaagagaaagcagaagggactat
gacagaagctctcgtgatggcagtaggtacaacagagaaactagttcccgtagaagtagg
agtcggagcagaagcagaagtcagagcttgcaagctcgcaatgaccacattgatcatcgt
tcgagtccactcgcagatgggagcaaagagaagacctcggcatctgccaatctggcgaag
ctcagagatctgtatggtgacacaggtgatcaaaaagggggcagtgccatggaaagaggc
agtcgtagggacaatagcggtgaagaggtgattagacttggcggttcgtcttggaagtaa
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